Query= MSMg01no195_n19.b1 MSMg01no195_n19.b1 CHROMAT_FILE:
MSMg01no195_n19.b1 PHD_FILE: MSMg01no195_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:12 2005
(223 letters)
>mm_chr9_71203343_71203965
Length = 623
Score = 416 bits (215), Expect = e-121
Identities = 221/223 (99%)
Strand = Plus / Plus
Query: 1 acaattgatcatctagggcagatggacaatgagaactgttgtattgtgcaactccaagtt 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 acaattgatcatctagggcagatggacaatgggaactgttgtattgtgcaactccaagtt 260
Query: 61 ctgctcaatgtggtaacgttataacgttcccctcccagttcagacccaataaagactcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgctcaatgtggtaacgttataacgttcccctcccagttcagacccaataaagactcag 320
Query: 121 aagacagacaggcaaaataccatatgctcacgcagatgagctcattagaagttactgctt 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagacaggcaggcaaaataccatatgctcacgcagatgagctcattagaagttactgctt 380
Query: 181 tagattcatggacaaagggtttgttcacacttctctgggttag 223
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagattcatggacaaagggtttgttcacacttctctgggttag 423
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 623
Length adjustment: 9
Effective length of query: 214
Effective length of database: 614
Effective search space: 131396
Effective search space used: 131396
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no195_n19.g1 MSMg01no195_n19.g1 CHROMAT_FILE:
MSMg01no195_n19.g1 PHD_FILE: MSMg01no195_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:12 2005
(573 letters)
>mm_chr9_71260292_71261265
Length = 974
Score = 1071 bits (554), Expect = 0.0
Identities = 569/574 (99%), Gaps = 1/574 (0%)
Strand = Plus / Minus
Query: 1 cagttagaaagctttgtcccatgaacagtggtgttttgctcagctttgcttcaaactgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 cagttagaaagctttgtcccatgaacagtggtgttttgctcagctttgcttcaaactgat 715
Query: 61 agccttgggagatgggagaaaggcaagctaggagaccagttctgttctgagttgggccag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 agccttgggagatgggagaaaggcaagctaggagaccagttctgttctgagttgggccag 655
Query: 121 ggtcactctttgtgaccacagagggccctctcatttctggggctttcagaacatctgtct 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ggtcactctttgggaccacagagggccctctcatttctggggctttcagaacatctgtct 595
Query: 181 ctatttccttgaaaacttcaggagattgtagttctgactgtgctatcaaataaggggacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ctatttccttgaaaacttcaggagattgtagttctgactgtgctatcaaataaggggacc 535
Query: 241 ctgcaaggcaaaaggcatgaccagaggcaaaacctaaacaaacaaacaaacaaaaacgga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ctgcaaggcaaaaggcatgaccagaggcaaaacctaaacaaacaaacaaacaaaaacgga 475
Query: 301 cacagagcatagaaaacataggggaaagtcagaagagagacctctgaggaagaggcctct 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 cacagagcatagaaaagataggggaaagtcagaagagagacctctgaggaagaggcctct 415
Query: 361 aggagagaggagaaaggccagcactggaaggtggagacagagctggaggagagcaaggct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 aggagagaggagaaaggccagcactggaaggtggagacagagctggaggagagcaaggct 355
Query: 421 cctctccacacctgtaactctactccttgttggttctcttcaggggccctcatgctgcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 cctctccacacctgtaactctactccttgttggttctcttcaggggccctcatgctgcat 295
Query: 481 gcagttccattttttaagtggacccctttagagccttcagccctaaagaagcttaaaaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gcagttccattttttaagtggacccctttagagccttcagccctaaagaagcttaaaaaa 235
Query: 541 taaagg-acaaataaacctgtttctagctttgag 573
||| | |||||||||||||||||||||||||||
Sbjct: 234 aaaaagtacaaataaacctgtttctagctttgag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 974
Length adjustment: 10
Effective length of query: 563
Effective length of database: 964
Effective search space: 542732
Effective search space used: 542732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
