BAC Information

Click to search

BAC

Clone NameMSMg01-197B15
Chromosome9 (Build37)
Map Location 5,058,855 - 5,059,138
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384912, LOC100039253, Aasdhppt, Kbtbd3, LOC664860, 8430410K20Rik, Gria4, EG664889
Downstream geneCasp1, Casp4, Casp12, LOC547033, LOC100039361, LOC100039372, LOC664957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197B15.T7 (MSMg01no197_b15.b1)MSMg01-197B15.TJ (MSMg01no197_b15.g1)
ACCAG384967AG384968
length7041,002
length of high quality
(start - end)
285 (72 - 356)---
definitionCHROMAT_FILE: MSMg01no197_b15.b1 PHD_FILE: MSMg01no197_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:51 2005CHROMAT_FILE: MSMg01no197_b15.g1 PHD_FILE: MSMg01no197_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAGGATTCTCAGAGAGTGGCATGACCTCTAGGGTTGCAGGTACTTA
CTTACATGGCCTTTGTTGGCGCAAGAGGTTTCTGGGTTTCTAAGTGCTAG
TGTGGCCACTGTTGTTCTGGAGCTGTGATGTATATTTTGGGGTTGTAGGT
ACTATGAAGCATATGGTAAAGCAGTGGGCTATACTGTAGTTGTGGGTTCA
GGTATGGAGACAAGGGGAAGAGCTGCCATTGTTAATCTGGGAAGGATTTG
AGAAAACATTGTGTATCTTTGGATAGGTTTCTGTGTCAAGAGTAGCCTTT
TGTATATTTTTGTTTTTCTCCACCCCCCCAGGCTGAGTTAGTAATTTTTT
TAACTCTGAAAATTTTTATCTTTTACTTATAACCAGTTTTCTTTCCCCAA
AATTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTACT
TCTTTCTTTCTTTCTTTCTTCCTCCCTTTCTTGCCCGTTATCATTCCTTT
CTTTCTTTTTCTCCCCTCCATCTTTTCACCCGTTCCTTCCTTATTTTCTT
TCTTCCATCAATCCTTTCTTTTACTTTTTATCATTCCTGCTTTTAACGTT
TTCTTTATTCCTTTTTCCAACTATTTATATTACCATATTCTTAATTCCTC
TCAC
GGGGTGGTTGGGGTNTTNTTNCTNCCAACAATCAAACAAGAGGGGGGTGC
CCGGGAGGAGGGGGGGGGGAGGGGAGGGAGGAANNANGGGTCCGGGAGGG
GGCGGGGGGANAGGAGGGAGGGGCAGGGGAGGAGGGGAGGGGAAAGAGGG
GAGGGCGGAGGGGGGGGAGGGGGGGGGGGGGTGNAGGCGGAAGAGGAGGG
GGGGGGNGNGNNGGGNGNNNNGNGGGGNNGNGGGGGGGGGGGGGGAGGGG
GGGAGGGGGGGGGAGGGGAGGGAAAAAGNAAAGAGGAAGGGGAAGGGAAG
GGGGGGGGGGGGGGGGGGGGGGGGAAGGAGGGGAGAAGAAGAGGGGGGGG
GGGAGGGGGGGGGGAGAGGAGGAAGGGGAGAGAGGGGGGGAGGGGGAGGA
AAAAGAAAAAAGAAGGGGTTGTGAGGGGGGGAGAAGGGGAGGGGGGGGAG
GGGGGGGAAAATTGTTGGGGGTGGNGGCCGGAAAGACGGAAGNCCCGGTG
NGTGGGGGGGGGAGGGNNGGNNNNGTGGGGGGGGGGGGGGGGAAAAAAAN
NNTTGGATNTTTGGTAAAAGGGGGGGTTTTTNTGTTNTNTGGGTGGGNGN
TTTTTNTNTTTTTGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGTGGT
GGGGGGGGGGGGGGGGGTGGGGTGGGTGGTGGGGGGGGGGGTGGAGGGGA
GGGGGGGGGGGGGGGTGNGGGGGGNGGGGGGGGGGGGGGGGGTGTTGGGG
GATGGTGGGGGGGGGGGGTGGNGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGTGGGGTTGGGGGGGGGGGGGTGGGGGGGGAGGGTGAG
GGGAGGGGAGGGGTAGGGAGTGGGGGGGGGGGGGAGGGAGGAAGAGAGAG
AGAGAGGGAGGAGGGGGGGGGGAGGGGGAGGGGGGGAGGATAGGGGGAGG
GGGNAGAGGATGAAGGGGGGGGGGGGGGAGAAAAAGGGGGGAGGGGGAAG
GN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_b15.b1 MSMg01no197_b15.b1 CHROMAT_FILE:
MSMg01no197_b15.b1 PHD_FILE: MSMg01no197_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:51 2005
         (285 letters)



>mm_chr9_5058655_5059340
          Length = 686

 Score =  482 bits (249), Expect = e-140
 Identities = 276/285 (96%), Gaps = 3/285 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggcatgacctctagggttgcaggtacttacttacatggcctttgttggcg-caagaggtt 59
           ||||||||||||||| |||||||||||||||||||||||||||| ||| |  ||||||||
Sbjct: 484 ggcatgacctctaggcttgcaggtacttacttacatggcctttggtgg-gaaaagaggtt 426

                                                                       
Query: 60  tctgggtttctaagtgctagtgtggcc-actgttgttctggagctgtgatgtatattttg 118
           |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 425 tctgagtttctaagtgctagtgtggccaactgttgttctggagctgtgatgtatattttg 366

                                                                       
Query: 119 gggttgtaggtactatgaagcatatggtaaagcagtgggctatactgtagttgtgggttc 178
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gggttgtaggtactgtgaagcatatggtaaagcagtgggctatactgtagttgtgggttc 306

                                                                       
Query: 179 aggtatggagacaaggggaagagctgccattgttaatctgggaaggatttgagaaaacat 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aggtatggagacaaggggaagagctgccattgttaatctgggaaggatttgagaaaacat 246

                                                        
Query: 239 tgtgtatctttggataggtttctgtgtcaagagtagccttttgta 283
           || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tgcgtatctttggataggtttctgtgtcaagagtagccttttgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 686
Length adjustment: 9
Effective length of query: 276
Effective length of database: 677
Effective search space:   186852
Effective search space used:   186852
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)