BAC Information

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BAC

Clone NameMSMg01-198C20
Chromosome9 (Build37)
Map Location 121,463,090 - 121,463,369
singlet/doubletsinglet
Overlap genenone
Upstream geneEntpd3, Rpl14, 5830454E08Rik, LOC100040010, Ctnnb1, Ulk4, Trak1, Cck
Downstream geneLyzl4, Vipr1, LOC100040063, Sec22c, Deb1, Nktr, Kbtbd5, Hhatl, Ccdc13, Higd1a, Ccbp2, Cyp8b1, C730027P07Rik, C85492, LOC100040121, Snrk, Tmem16k, Abhd5, LOC100040193, LOC100040204
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198C20.T7 (MSMg01no198_c20.b1)MSMg01-198C20.TJ (MSMg01no198_c20.g1)
ACCAG385614AG385615
length706740
length of high quality
(start - end)
311 (45 - 355)301 (440 - 740)
definitionCHROMAT_FILE: MSMg01no198_c20.b1 PHD_FILE: MSMg01no198_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:19 2005CHROMAT_FILE: MSMg01no198_c20.g1 PHD_FILE: MSMg01no198_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTGTTCCAGTGTTCTGCTGGAATATGCATTCCACTCTTTGTAGGA
AGTGGTCTTATGCAAACTCTTTACCTGTTTGGTTCCTCTGTTTGCCCACA
CTGTAAATGGAAATGTGCCTAGGTCTTAGGATTCTTGTGCTCTGTGCCTT
TGAGGAGAGCGCAGTTAAATCCCAGGGGACTGTAGGTAATCCAGGTTGGT
TTGTTTGACTGATTGATTTTATAAATGTTACACACTGGACAGGCAATACT
TTTTGTAAAAATATTTTTATATTGAAGTCAGAGCTCACCCTGTCTTGAGC
ACATTTTTTGCTCACCACACACCATTCTAGAAAGCTGTGGATAATGTCCT
GAGAAGGGCTTGTGCGGTCCAGAAAGGACATTGACAGATCAAACACACCA
TGCAGTCCTATTCCAGCTTGGTGAGCCAGTGAGCTGACTGGGCTCCTTCA
GAGGAGAGGAGAGGGGAGGGGAGGGGAGTGTTTTNTNTCTTTTTTTCTTN
TTTTTTTCCTCTTTTTTTCCTCTTCTCCCTTTTTCTTTTTTTTCCGCTTT
TTTTCTTCTTTTCTTTTTCCTTCCCCCCCTTTTCCCTTCCTTTTTTTTCC
TCTCCCCCCCTTTTCTCTTCCTTTTTTTCTTTCTTCCCTCCTTCCTCTCT
TCCTTT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAACGTGTGCTCAGGTTAAAGATT
TCTCTGACCGTGTTTCCCTGGCGTCACCAGGAGGACTAGGGATCCCTTTT
CTACAACTGAAGAAACACTGAAGATCCCAGCGGGTGAAGGTGGGCCAGGG
TGGGCTTGCTGAACATGACATAGATTGGAAAATGTTGCTTTCAATATATG
TTCCATTTGTGCAACTCTGTCCTGCAGGCCTTGGTCGGGAGGAGCTGCAC
TGCGGGTGGTGGTTCTTAGATCATCTCTGTGGAGAAGCTGCACTGCGGGT
GGTGGTTCTTAGATTCCTTTGCTGCTGNCCCCACCCAAGGAACAGATTCT
GCTCTGGATGGCAGGAGTCTTCCCAGCATGAAAGACATGACTGCAGTGTG
ACAGGGCTGAAGGCAAGCCGTCACAGGCTGTTGTGTAACTGTTTCCTCTA
GATTAAACATTTCCTCCTCAAGGGGACAGGGAGACTCACCAGGCTTATGA
AACTCACAGGAAACAAGCCCCCAACCCCGATTATAAAACTGGTCAATGGT
TTCTATAAATGGAAGAGGAGACTCTTCTGTGGAGTTGCCTGCAAGTTGTG
CAGGGAGCTCTGAAGACGCGGCTTTCGTGAGCTGCCGCCCATGTTGGTCT
GTGCTGCCTTAGGTAAACCTGATAAAGCCAGCAAGCTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_c20.b1 MSMg01no198_c20.b1 CHROMAT_FILE:
MSMg01no198_c20.b1 PHD_FILE: MSMg01no198_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:19 2005
         (311 letters)



>mm_chr9_121462887_121463597
          Length = 711

 Score =  526 bits (272), Expect = e-154
 Identities = 278/280 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactgttccagtgttctgctggaatatgcattccactctttgtaggaagtggtc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ggaattcactgttccagtgttctgctggaatatgcattccactctttgtaggaagtggtc 424

                                                                       
Query: 64  ttatgcaaactctttacctgtttggttcctctgtttgcccacactgtaaatggaaatgtg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ttatgcaaactctttacctgtttggttcctctgtttgcccacactgtaaatggaaatgtg 364

                                                                       
Query: 124 cctaggtcttaggattcttgtgctctgtgcctttgaggagagcgcagttaaatcccaggg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 cctaggtcttaggattcttgtgctctgtgcctttgaggagagcgcagttaaatcccaggg 304

                                                                       
Query: 184 gactgtaggtaatccaggttggtttgtttgactgattgattttataaatgttacacactg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gactgtaggtaatccaggttggtttgtttgactgattgattttataaatgttacacactg 244

                                                   
Query: 244 gacaggcaatactttttgtaaaaatatttttatattgaag 283
            ||||||||||||||||||||||||||||| |||||||||
Sbjct: 243 aacaggcaatactttttgtaaaaatattttcatattgaag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)