BAC Information

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BAC

Clone NameMSMg01-198I19
Chromosome9 (Build37)
Map Location 79,060,150 - 79,060,453
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109, LOC384957, EG666456
Downstream geneLOC436085, LOC235509, LOC666479, Col12a1, Cox7a2, Tmem30a, Filip1, LOC100041218, LOC666490, Senp6, LOC100041249, Myo6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198I19.T7 (MSMg01no198_i19.b1)MSMg01-198I19.TJ (MSMg01no198_i19.g1)
ACCAG385824AG385825
length719736
length of high quality
(start - end)
332 (9 - 340)289 (74 - 362)
definitionCHROMAT_FILE: MSMg01no198_i19.b1 PHD_FILE: MSMg01no198_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:49 2005CHROMAT_FILE: MSMg01no198_i19.g1 PHD_FILE: MSMg01no198_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCCTATAGGGAGAGGATCCGCGGAATTCAGTTCCAAGCATCCACGTCA
GGAGGTTAAAGTTCGCCTGTAACTTCAGCTCCAGGATATCTCTTCTGTAC
CCCCAGGCCACCAGCACTAACAATGCCAAAACCAACATACATGCACACAT
AATTAAAATACATATATAAACAAAAGAATGAAACTATAAATGTCTAAGGA
AATGGTCATATTTAAACATGCATTGAACCATTGTGTTACTTCATTATATT
TGTAATTTAATCTATGTGTCAATTAAAATAAATCTGATTTAAATTAAAAC
CAATGCATGCATTCAGATATGGAAAATTAGATAAATATGTATAATTTACC
CCCCCCCCCCCCCAGATGATAGGGAGATGGCTGAATGGATAAAATGCTTG
TCTCACTAATACCAGGACCAAATTTTGGACTCCCAAACCTATGTAAATGC
TAGGAAGTGTATCAGCCATGTGTAATCCAAGCATATAAGAAGTGGAGACA
GAGGATCCTTATAACAACCCAGCTAGAAAGACTAGCCAGAATTTGCAAGC
TTTGAGCTAGTGATAGATCTTTTTTCATTAATTTAAGTTTACAGGTATCC
ACGTCATACTTTCACATGTGCGAACACACTCACTACCGCTCACTAACATC
ATTTACATGTAAAAAACATATCCAATACTAAATATTATGCATATTTATTA
CTACCCTGCGCAAAAACTG
ACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTAGGTATATATTCCATTTGGTTTGT
TGATGTCAAAATTCTTGAGTTCTTTATATATTTTGGATATTAGTCCTCTG
TCAGATGTAGGGTTGATGAAGATCTTTTCCCACTCTGTAGGGTGCCTTTT
GTCTTGTTGATGGTATCTTTAGCCTTGAAAAAGCTTTTTAGTTTCATAGG
GTCCCATTTATTAATTGTTGATCTTAATGCCTGAGCTATCAGTGTTCTGT
TCAGGAAGTTTTCTCCTTTCCTAATGAGTTCAAGGCAGTTTCCACTTTCT
TTTCTATTAGATTATTTTATCCACCCCCACCTCGAGGTCTTTGATGTACT
TGTACTTGAGTTTTGTGCAGGGTGATAGATATGGGTCTATTTGCATTCTT
CTACATGCAGACATCCAGTTAGACCAGCACCATTTGTTGAAGATGCCTTC
ATTTTTCCATTGTTTGGTTCTGGATTATTTGTCAAAAATCAAGTGTACAT
AGGTTTTATTTCTGTGTCTTTGATTCTTTTCTATTGATTAATGTTTCTGT
TTTTATGCCTGCACCACACAGTTTTTAAATAGTGATAGCTCCAGAAGTTC
TTTTATTGTACAGGATATTTTAGTTATTCTGTTTCTATTTTTTTTCATAT
GAAGCTGAGAATTGCTCTTTGAAGGTCTGTAAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_i19.b1 MSMg01no198_i19.b1 CHROMAT_FILE:
MSMg01no198_i19.b1 PHD_FILE: MSMg01no198_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:49 2005
         (332 letters)



>mm_chr9_79059792_79060523
          Length = 732

 Score =  522 bits (270), Expect = e-152
 Identities = 299/316 (94%), Gaps = 13/316 (4%)
 Strand = Plus / Minus

                                                                       
Query: 17  gaattcagttccaagcatccacgtcaggaggttaaagttcgcctgtaacttcagctccag 76
           ||||||||||||||||| |||||||||||||||||||            |||||||||||
Sbjct: 662 gaattcagttccaagcacccacgtcaggaggttaaag------------ttcagctccag 615

                                                                       
Query: 77  gatatctcttctgtacccccaggccaccagcactaaca-atgccaaaaccaacatacatg 135
           |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 614 gatatctcttctgtactcccaggccaccagcactaacacatgccaaaaccaacatacatg 555

                                                                       
Query: 136 cacacataattaaaatacatatataaacaaaagaatgaaactataaatgtctaaggaaat 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 cacacataattaaaatacatatataaacaaaagaatgaaactataaatgtctaaggaaat 495

                                                                       
Query: 196 ggtcatatttaaacatgcattgaaccattgtgttacttcattatatttgtaatttaatct 255
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 494 ggtcatatttaaacatgcattgaaccattgtgttacttcattatatttgtaatttactct 435

                                                                       
Query: 256 atgtgtcaattaaaataaatctgatttaaattaaaaccaatgcatgcattcagatatgga 315
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 434 atgtgtcaattaaaataaatctgatttaaattaaaaccaatacatgcattcagatatgga 375

                           
Query: 316 aaattagataaatatg 331
           ||||||||||||||||
Sbjct: 374 aaattagataaatatg 359


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)