Query= MSMg01no198_j19.b1 MSMg01no198_j19.b1 CHROMAT_FILE:
MSMg01no198_j19.b1 PHD_FILE: MSMg01no198_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:54 2005
(704 letters)
>mm_chr9_60671569_60672677
Length = 1109
Score = 1164 bits (602), Expect = 0.0
Identities = 678/704 (96%), Gaps = 6/704 (0%)
Strand = Plus / Minus
Query: 5 gaattccaaggcaactgctctcacacatcccaaacataacaaactagggtccacgagaac 64
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 703 gaattccaaggcaactgctctcacacatcccaaacataacaaactagggtatacaagaac 644
Query: 65 agagctctcgggcagctcagatcttagtgtacccttcagacctttagcaattgataattt 124
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 643 agagctctcgggcagctcagatcttagtgtacccttcaaacctttagcaattgataatta 584
Query: 125 aaaaatgtaaactcccaaatattttcaggaaaagtatccaaattacag-tttttaaaatg 183
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 583 aaaaatgtaaactcccaaatattttcaggaaaagtatccaaattacagttttttaaaatg 524
Query: 184 tctaaatactatgactaa-ttttttttaatatagaggtaaaaaccaaggagggactttta 242
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tctaaatactatgactaatttttttttaatatagaggtaaaaaccaaggagggactttta 464
Query: 243 aaagcttctgcccctacacacaccagacaacaaagatatttgaaacattttgacaaatgt 302
||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||
Sbjct: 463 aaagcttctgcccctacacacacaagacaacaaggatacttgaaacattttgacaaatgt 404
Query: 303 ttttgccagctttgaaagcaccaaaggcaacacacacatactag-taaagagcctcaagc 361
|||||||||||| ||| |||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 403 ttttgccagcttcaaaaacaccaaaggcaaaacacacatactagctaaagagcctcaagc 344
Query: 362 tagagcacacacagggaaaacagcccattgatagtctaatcctttcataagctgag--tt 419
|||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||
Sbjct: 343 tagagcacacacagggaaaacagcccattgctactctaatcctttcataagctgagtttt 284
Query: 420 ttttggaagggtttgcaaacaacaatgaaatataaatacggtcccaagaactcaaaagac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ttttggaagggtttgcaaacaacaatgaaatataaatacggtcccaagaactcaaaagac 224
Query: 480 tgttcaatagtcaagcagagggcctggagagatggatccgtaatgaagatcccgctcaac 539
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 223 tgttcaagagtcaagcagagggcctggagagatggatctgtaatgaagatcccgctcgac 164
Query: 540 tcttgcagaggacccaagacaggaagctcatatatgccctcttctggactccacggacat 599
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 163 tcttgcagaggacccaagacaggaagctcatatacaccctcttctggactccatggacat 104
Query: 600 tgcactcacatgcacatacccatttttagatacacatgcaagcataatcaaaaataaatt 659
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 103 tgcactcacatgcacatacccatttttagat-cacatgcaagcataatcaaaaataaatt 45
Query: 660 ctgtcactaaagaagaatgaagctgaaaacaagccttataattc 703
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 ctgtcactaaagaagaatgaagctgaaaacaagccttataattc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1109
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1099
Effective search space: 762706
Effective search space used: 762706
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no198_j19.g1 MSMg01no198_j19.g1 CHROMAT_FILE:
MSMg01no198_j19.g1 PHD_FILE: MSMg01no198_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:54 2005
(475 letters)
>mm_chr9_60637081_60637955
Length = 875
Score = 864 bits (447), Expect = 0.0
Identities = 462/467 (98%), Gaps = 1/467 (0%)
Strand = Plus / Plus
Query: 1 actctgtagaccaggctggctttgagctcagagatctgcttgcctctacctcctgagtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctgtagaccaggctggctttgagctcagagatctgcttgcctctacctcctgagtgc 260
Query: 61 tgggattaaaggcatgagccaccatcacttggctactaaaacactttttacagtgcatca 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggattaaaggcatgagccatcatcacttggctactaaaacactttttacagtgcatca 320
Query: 121 ctcgggggctagagagatagctttgtggttaagaggacttgttgctcttctagaggaccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcgggggctagagagatagctttgtggttaagaggacttgttgctcttctagaggaccc 380
Query: 181 aagttcagttcccagcatccatgttgggcagttcacaatggcctataactgcacctccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagttcagttcccagcatccatgttgggcagttcacaatggcctataactgcacctccag 440
Query: 241 gagatctgatgatgtcttcttctggcttctttgggcatctgtgcacacagacatattcac 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 gagatctgatgatgtcttcttctggcttctttgggcatctgtgcacacaggcatattcac 500
Query: 301 ctacaccgaactaaaaaaaaaatattttaagtgcattgtcctttctatttacatatattg 360
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 ctacacagaactaaaaaaaaaatattttaagtgcattgtcctttcgatttacatatattg 560
Query: 361 ctaaaaggcaaaccttaattaaaactggcttctgtagatttagtataataaataattttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctaaaaggcaaaccttaattaaaactggcttctgtagatttagtataataaataattttt 620
Query: 421 tgaaagttttctctgaagatgtgtgtgtgtgtatgtgtgtngtgtgt 467
|||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 tgaaagttttctctgaagatgtgtgtgtgtgtatgtgtgt-gtgtgt 666
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
