BAC Information

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BAC

Clone NameMSMg01-199B09
Chromosome9 (Build37)
Map Location 14,132,296 - 14,132,749
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039758, Maml2, Mtmr2, Cep57, 2810485I05Rik, LOC665329, Sesn3
Downstream geneEndod1, LOC665351, EG547035, Jmjd2d, 0610040D20Rik, Amotl1, EG665374, Piwil4, Fut4, 1700012B09Rik, Ankrd49, Mre11a, LOC100040259, Gpr83, Folr4, Panx1, Hephl1, 2200002K05Rik, Crsp6, 4931406C07Rik, Josd3, 5830418K08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199B09.T7 (MSMg01no199_b09.b1)MSMg01-199B09.TJ (MSMg01no199_b09.g1)
ACCAG386156AG386157
length719755
length of high quality
(start - end)
90 (198 - 287)454 (88 - 541)
definitionCHROMAT_FILE: MSMg01no199_b09.b1 PHD_FILE: MSMg01no199_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:31 2005CHROMAT_FILE: MSMg01no199_b09.g1 PHD_FILE: MSMg01no199_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAGAGTCCCGAGGTCCGCGGAATTCTTTCTTCTTACAAACAAAGTTTGG
CATGTCTCACATTGGCATTGTTTACTTTCAAAGGAATCTGGGTGGCACTA
TGTCAGCTGATAGGCAGTGATAGGTTGAGACTCCAGAGGGTGTTCAAGCA
CTCATTGCCTCAGGTCTTGATGGCTATAAAAGAAGAAGCCGTGAGGCTCC
AGGCTCACAGGAAGAGCAAGTCCTCCAGGAGAAAGCTGCTCTCTGGTGTT
GGATTTCCTTCTCCCAGGTCTCCATTGCATTGGTGCTGGGTAAGTTTTAT
CTCTCTTCACAACTTTTGGAAATTTGTTCTTGTGAGATAATGACTAGTGG
CAAAAGTTGGAAAGATTCAATTATTCTACAAAACATCGCCCCCTGCTTTT
CAGACTGAGGCTTTCGTGAGCCATTTTCTTCTGAGAGTTATCTGCGCTCC
TTTCTCATGAATGAGCAGTCTGAGATCTGATTACTATTGGACTACTATTA
AAGATGATATCTGTTCTTGAATTTAATACTTGTTTATAATTTCTCTACCT
CTTGCTTCTTTGTTTTTCCGTATTCTCTATTCTCACCCGCTTTCTTGACA
CTCCTCTCTAATATACTTTTTAATATGTACTTATTTAGATTATATCAGTG
TTAGACTTGTTGCCACTTCCTTATCTTCATCCCAAACATAACTTGTCCTT
TCCTATCTTCCTCCCTAGG
CAACCACCNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACGGGTCCCTG
AATAAGCTTTAGACCAAAAGGGAAGACAAGGGTTAAATACAGTGACCACC
TACTTTTTGGTTTTGGTTTTGTGTTGCCCCAGAAATGTCAGTAGAGATTG
GGCTGTGGAAATCATTAGTGCCTTCAATAGATTTCTCTCCTAGAAAAGCT
TCCTTTTAGTTCTTCAGGATCAGTCAATAATCAGGAGAATAAGTGCATGA
AAACACAGCAATGTACTTATGAACCTAAGTGAACCAGCCTCAAAAAGTTG
ATTTGTGAAGGCGGCTCCACCTCCATGCTTCAGCAGATACAGCATTCCCG
GTGTGCTTGCTGCTGTGAGAATTTGCTGCCAACCCATCTTTATCCAGTGC
AAACTTGAAATTCTGATGCGGTTTTCCAGGGTGGCATTTTTTTTTCAGAG
TATTGAATTTACGATGTAGTAATTTATAGTGTAGCTTTTTATACATAAAT
GTGATATTTTTTAAAAGGAGCTACCTGACTTCTGTCGGTATCATAACAGA
GTCTATCACAAGCTGAGCTGCTTCTCGCCCGTTTTTTCCACTGTGCCCAT
TTTAACCGTGTTATCGCCTTTTATTATCTCCCTCTGTTTGTTATATCTCT
TATTCCCCTGCCTCTTTGCATTAATTACCCCTTTGTATTCCTTAGCATGT
TCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_b09.g1 MSMg01no199_b09.g1 CHROMAT_FILE:
MSMg01no199_b09.g1 PHD_FILE: MSMg01no199_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:32 2005
         (454 letters)



>mm_chr9_14132096_14132949
          Length = 854

 Score =  855 bits (442), Expect = 0.0
 Identities = 451/454 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacgggtccctgaataagctttagaccaaaagggaagacaagggttaaatacagtgacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacgggtccctgaataagctttagaccaaaagggaagacaagggttaaatacagtgacc 260

                                                                       
Query: 61  acctactttttggttttggttttgtgttgccccagaaatgtcagtagagattgggctgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acctactttttggttttggttttgtgttgccccagaaatgtcagtagagattgggctgtg 320

                                                                       
Query: 121 gaaatcattagtgccttcaatagatttctctcctagaaaagcttccttttagttcttcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaatcattagtgccttcaatagatttctctcctagaaaagcttccttttagttcttcag 380

                                                                       
Query: 181 gatcagtcaataatcaggagaataagtgcatgaaaacacagcaatgtacttatgaaccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatcagtcaataatcaggagaataagtgcatgaaaacacagcaatgtacttatgaaccta 440

                                                                       
Query: 241 agtgaaccagcctcaaaaagttgatttgtgaaggcggctccacctccatgcttcagcaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtgaaccagcctcaaaaagttgatttgtgaaggcggctccacctccatgcttcagcaga 500

                                                                       
Query: 301 tacagcattcccggtgtgcttgctgctgtgagaatttgctgccaacccatctttatccag 360
           |||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 tacagcattcccagtgtgcatgctgctgtgagaatttgctgtcaacccatctttatccag 560

                                                                       
Query: 361 tgcaaacttgaaattctgatgcggttttccagggtggcatttttttttcagagtattgaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcaaacttgaaattctgatgcggttttccagggtggcatttttttttcagagtattgaa 620

                                             
Query: 421 tttacgatgtagtaatttatagtgtagcttttta 454
           ||||||||||||||||||||||||||||||||||
Sbjct: 621 tttacgatgtagtaatttatagtgtagcttttta 654


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)