BAC Information

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BAC

Clone NameMSMg01-199C01
Chromosome9 (Build37)
Map Location 6,329,479 - 6,330,080
singlet/doubletsinglet
Overlap genePdgfd
Upstream geneCasp4, Casp12, LOC547033, LOC100039361, LOC100039372, LOC664957, LOC676037, Ddi1
Downstream geneEG664919, LOC100039400, LOC100039418, EG547034, Dync2h1, LOC100039658, Dcun1d5, Mmp13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199C01.T7 (MSMg01no199_c01.b1)MSMg01-199C01.TJ (MSMg01no199_c01.g1)
ACCAG386183AG386184
length727705
length of high quality
(start - end)
315 (47 - 361)596 (88 - 683)
definitionCHROMAT_FILE: MSMg01no199_c01.b1 PHD_FILE: MSMg01no199_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:35 2005CHROMAT_FILE: MSMg01no199_c01.g1 PHD_FILE: MSMg01no199_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTTAGCTCTGTACCCTGTTTTTAATAGGGTTATTTGGTTC
TCTGGAGTCTAACTTCTTTAGTTCTTTGTATATATTGGATATTAGCCCTG
TATCAGATGGAGGGTTGGTAAAGATATTTTTTCAATCTCTTGGTTGCCGT
TTTATTCTGTTGACAGTGTCTTTTGTCTTACAGAAGCTTTGAAATTTTAT
GGGGTGTCAAGTCTTTCATAGCTCTTTTCTATCATGCTCCTAAAATTTTA
TAAACAAAATGTATTAGTTTTTACTTTCTTTTTTCCTTTACATTGTAAGT
GAATAAGTATCATGTACTCTCAAAGAACGTCATATGCTTTCAGAAGGGCT
ATTGTAAATTTTACAAGCATGTGAGACTCCGCTGTCTGAAAAGCCAAATA
ATTATTTGTCCCAGGGTCCCGGGAAGCACAGAGGAGAAAAATGACCATAC
TTGAAAACATCTATTTTATAATTTTTTTAGTCTATTAAGTTTGCTCTTTA
TGAAGTTTTGTTTAATGCCACAAGACAGTGCTAGACACATTATTATCCCA
CCTGTAGAGAAACTTACTCTTTGCTTGGGTCAATAATAAAAGTACCAGAA
AGTAAGAGTATAACACAAAATTTTAGAGACTCAAGGTCACTATTTCATTA
TCACACTTCTTGTACTAATACAATTTT
ATCCCCCNNNNCTCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTACATTTCAGA
TAAAATGCAACTTTAGATTCTCTTAGTTACACAAATACACAGTGTTTAAG
AGAAGCCGAGTTCTATATTAAACTGTCATCATTTATAAGTAACATATTTA
AAATAAGCATAAAAAGGGAACAGCATCATTTATAACAATGAATTTCTGAA
GTTTTAGCTCTGAAAGAAGAATTTTGTCCTAAGAAGGTATTTGTGTGTGT
GTGTGTAATATAATTTGTAGATACACATCAAGTGTTATAATTTTTCATCT
CTAGGACAAACCTGCCTTTAGCAGGCATGTTCCAGTGGCAACTAGCAGGG
TGCTATAATTGCATCAAATCCATCCAGTCCTCTGCTATAGCTACTCAATG
ACTGCTTTCTATTACAGGTGGTGCCTATGTCCAGAGCCTGTGAGAGCTAA
TTTCTTGTGTCCCTCTATCTGATTTGGTGTTCTGCATTTCCCACTGACTC
CATTATTTCCACAATGGCCTCCTTAGGATCTTTCAGATAGCTTCAAGCTT
TTTGCCCTTTAATCGGATGCTGTTGACTGCCTGGAAGTATTTCCATCAAA
TATTCCTGGAGCTGACTCCTNCACAGTTATCTGTCAGCTAAAACATCAGA
TTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_c01.g1 MSMg01no199_c01.g1 CHROMAT_FILE:
MSMg01no199_c01.g1 PHD_FILE: MSMg01no199_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:35 2005
         (596 letters)



>mm_chr9_6329279_6330280
          Length = 1002

 Score = 1077 bits (557), Expect = 0.0
 Identities = 588/602 (97%), Gaps = 6/602 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attacatttcagataaaatgcaactttagattctcttagttacacaaatacacagtgttt 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 802 attacatttcagataaaatgcaactttatattctcttagttacacaaatacacagtgttt 743

                                                                       
Query: 61  aagagaagccgagttctatattaaactgtcatcatttataagtaacatatttaaaataag 120
           || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 742 aatagaagccgagttctatattaagctgtcatcatttataagtaacatatttaaaataag 683

                                                                       
Query: 121 cataaaaagggaacagcatcatttataacaatgaatttctgaagttttagctctgaaaga 180
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 cataaaaagggaacagtgtcatttataacaatgaatttctgaagttttagctctgaaaga 623

                                                                       
Query: 181 agaattttgtcctaagaaggtatt------tgtgtgtgtgtgtgtaatataatttgtaga 234
           |||||||||| |||||||||||||      ||||||||||||||||||||||||||||||
Sbjct: 622 agaattttgttctaagaaggtatttgtgtgtgtgtgtgtgtgtgtaatataatttgtaga 563

                                                                       
Query: 235 tacacatcaagtgttataatttttcatctctaggacaaacctgcctttagcaggcatgtt 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tacacatcaagtgttataatttttcatctctaggacaaacctgcctttagcaggcatgtt 503

                                                                       
Query: 295 ccagtggcaactagcagggtgctataattgcatcaaatccatccagtcctctgctatagc 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ccagtggcaactagcagggtgctataattgcatcaaatccatccagtcctctgctatagc 443

                                                                       
Query: 355 tactcaatgactgctttctattacaggtggtgcctatgtccagagcctgtgagagctaat 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tactcaatgactgctttctattacaggtggtgcctatgtccagagcctgtgagagctaat 383

                                                                       
Query: 415 ttcttgtgtccctctatctgatttggtgttctgcatttcccactgactccattatttcca 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttcttgtgtccctctatctgatttggtgttctgcatttcccactgactccattatttcca 323

                                                                       
Query: 475 caatggcctccttaggatctttcagatagcttcaagctttttgccctttaatcggatgct 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 caatggcctccttaggatctttcagatagcttcaagctttttgccctttaatcggatgct 263

                                                                       
Query: 535 gttgactgcctggaagtatttccatcaaatattcctggagctgactcctncacagttatc 594
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 262 gttgactgcctggaagtatttccatcaaatattcctggagctgactcctcaacagttatc 203

             
Query: 595 tg 596
           ||
Sbjct: 202 tg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 1002
Length adjustment: 10
Effective length of query: 586
Effective length of database: 992
Effective search space:   581312
Effective search space used:   581312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)