BAC Information

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BAC

Clone NameMSMg01-199H17
Chromosome9 (Build37)
Map Location 25,517,419 - 25,518,031
singlet/doubletsinglet
Overlap genenone
Upstream geneTbx20, LOC666251, LOC100040960, Herpud2, LOC666297, 9130004C02Rik, Sept7, EG666327, 2310005P05Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199H17.T7 (MSMg01no199_h17.b1)MSMg01-199H17.TJ (MSMg01no199_h17.g1)
ACCAG386405AG386406
length741759
length of high quality
(start - end)
625 (46 - 670)598 (85 - 682)
definitionCHROMAT_FILE: MSMg01no199_h17.b1 PHD_FILE: MSMg01no199_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:03 2005CHROMAT_FILE: MSMg01no199_h17.g1 PHD_FILE: MSMg01no199_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGCAATTGACCCTTTTGAATCTGAGCCATGGCATAGCAGGCTGAC
TAATACAACCCCTAACCTCAGGAGCCAATAATCCTTAGAATGGGTGAATA
TGTTCTTTGAGGAACACAGGGATTAAGGTTATAGATGGAATTAGGGCTAA
TACTTAGGTGAATTTAAAGATATTATCCTGCATTATCCAAGTAGAACCAA
TGAAATAAAGGATCCTCCCATGCTCAGAAGCAGAAGATGATGCCAGGAAA
TTTAAAAAGTCTGTAGTATTAGCCTTAAGGATGAAGTTGGGTCACAGCCA
TGGGGAAAAAAAATTATACAGGGAGGCCAAAGGAGAGATAGACAGCTTCT
TAGAGCCTTTGCCAGCCCCACCACATTTCTGACTACTTGATTTTTTTTTT
AACCGTCCCAGATATCTGACTTCTTCAGGAAATAATGGCTATAAGATAAC
ATGCTTCTGTTATTTCCAGTCACAGCAGTAATCTTTTATTATGGCAGCAA
TCCAGAACTACACACACAATTGGGAATACACCCATTCTGAAATGCTTGTA
TGCTTCACGTCTCTTGAAGACCTCAGTCCTGTTCTATCCATTTTTTTCAA
TGCATGGAAGCATTTCCATGGTTCCAAATATTTGGTCTGGTTCATAGTGG
TTTGCAGCGAGAATGTCTAGTGATAATTGTTTCGGACAAGA
CATANNNCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACC
GAATGGCAGATAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGG
GAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAAT
GGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAG
AAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCA
CTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACT
GGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAA
CTGGTAAGAAGGACACATGCTCCACTACCCCCATAGCAGCCTTATTTATA
ATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGAT
ACAGAAAATATGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAA
AGAATGAATTTATGAAGTTCCTAGCCAAATGGATGGACCTGGAGGGCATC
ATCCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTC
ACTGATAAGTGAATATTAGCCCCAAACCTAGGATACCCAAGATATAAGAT
ACAATTTCCTAAACATATGAAACTCAAGAAGAATCAAGACTGAGGTGTGG
ATACTATGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_h17.b1 MSMg01no199_h17.b1 CHROMAT_FILE:
MSMg01no199_h17.b1 PHD_FILE: MSMg01no199_h17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:03 2005
         (625 letters)



>mm_chr9_25517210_25518231
          Length = 1022

 Score =  963 bits (498), Expect = 0.0
 Identities = 589/626 (94%), Gaps = 18/626 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagcaattgacccttttgaatctgagccatggcatagcaggctgactaatacaac 64
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gaattcagcaattgacatttttgaatctgagccatggcatagcaggctgactaatacaac 269

                                                                       
Query: 65  ccctaacctcaggagccaataatccttagaatgggtgaatatgttctttgaggaacacag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ccctaacctcaggagccaataatccttagaatgggtgaatatgttctttgaggaacacag 329

                                                                       
Query: 125 ggattaaggttatagatggaattagggctaatacttaggtgaatttaaagatattatcct 184
           ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 330 ggattaaggttatagatggaattagggctaataattaggtgactttaaagatattatcct 389

                                                                       
Query: 185 gcattatccaagtagaaccaatgaaataaaggatcctcccatgctcagaagcagaagatg 244
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 390 gcattatccaagtagaaccaatgaaataaaggatccttccatgctcagaagcagaagatg 449

                                                                       
Query: 245 at--gccaggaaatttaaaaagtctgtagtattagccttaaggatgaagttgggtcac-- 300
           ||  |||||||||||||||||||||||||||||||||||||||||||||||    | |  
Sbjct: 450 atctgccaggaaatttaaaaagtctgtagtattagccttaaggatgaagtt----c-ctt 504

                                                                       
Query: 301 -agccatggggaaaaaaaattatacagggaggccaaaggagagatagacagcttcttaga 359
            ||  ||||    |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aagg-atgg----aaaaaattatacagggaggccaaaggagagatagacagcttcttaga 559

                                                                       
Query: 360 gcctttgccagccccaccacatttctgactacttgattttttttttaaccgtcccagata 419
            ||||||||||   ||| ||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 560 acctttgccaggaacacaacatttctgactacttgatttttttt--aaccgtcccagata 617

                                                                       
Query: 420 tctgacttcttcaggaaataatggctataagataacatgcttctgttatttccagtcaca 479
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 618 tctgacttcttcaggaaataatggctgtaagataacatgcttctgttatttccagtcaca 677

                                                                       
Query: 480 gcagtaatcttttattatggcagcaatccagaactacacacacaattgggaatacaccca 539
           ||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 678 gcactaatcttttgttatggcaggaatccagaactacacacacaattgggaatacaccca 737

                                                                       
Query: 540 ttctgaaatgcttgtatgcttcacgtctcttgaagacctcagtcctgttctatccatttt 599
           || |||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 738 ttttgaaatgcttgtgtgcttcacttctcttgaggacctcagtcctgttctatccatttt 797

                                     
Query: 600 tttcaatgcatggaagcatttccatg 625
           || |||||||||||||||||||||||
Sbjct: 798 tt-caatgcatggaagcatttccatg 822


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1022
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1012
Effective search space:   622380
Effective search space used:   622380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)