Query= MSMg01no199_j08.b1 MSMg01no199_j08.b1 CHROMAT_FILE:
MSMg01no199_j08.b1 PHD_FILE: MSMg01no199_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:11 2005
(636 letters)
>mm_chr9_54401182_54402218
Length = 1037
Score = 1075 bits (556), Expect = 0.0
Identities = 629/686 (91%), Gaps = 53/686 (7%)
Strand = Plus / Plus
Query: 4 ggaattcctactgatacagggcttgtcccaagaactctggaaggttagagtcagcactga 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 ggaattcctactgatagagggcttgtcccaagaactctggaaggttagagtcagcactga 211
Query: 64 aaaatcctcactgaggacacattcaggatagttccagtggtcaggaactatcactactat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 aaaatcctcactgaggacacattcaggatagttccagtggtcaggaactatcactactat 271
Query: 124 aactatactga-----------------------------actatactatactatactat 154
||||||||||| ||||||||||||||||||||
Sbjct: 272 aactatactgaactatactatactatactatactatatatactatactatactatactat 331
Query: 155 actatactatactatac----tatactatactatactatactatactatactatactata 210
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 332 actatactatactatactatatatactatactatactatactatactatactatactata 391
Query: 211 cta-------------------tactatagtagtagtgatataactacagtggaaccaga 251
||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ctatatatactatactatactctactatagtagtagtgatataactacagtggaaccaga 451
Query: 252 gtcccagaaagggaggctccagagggtcaaacctcactgaggccatagagctccagggct 311
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 452 gccccagaaagggaggctccagagggtcaaacctcactgaggtcatagagctccagggct 511
Query: 312 gtggatatgggaggaagctcaggcctgagacccagtctctgacccccttagaggtgaaaa 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gtggatatgggaggaagctcaggcctgagacccagtctctgacccccttagaggtgaaaa 571
Query: 372 tggggtagcctgtgtccaccccagtgacaaggtagaatggtaggctggaagaggagcact 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tggggtagcctgtgtccaccccagtgacaaggtagaatggtaggctggaagaggagcact 631
Query: 432 gtccacacagagcggtcaggggagtgaaaaaaaa-cgccagcacaactctctggggaggc 490
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 632 gtccacacagagcggtcaggggagtgaaaaaaaaacgccagcacaactctctggggaggc 691
Query: 491 tgcaccaggctgtagccccagcccgagcatcgatctccagggaaactgatcctgagactt 550
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 692 tgcaccaggctgtagccccagcccgagcatcgatctccagggaaactgatcttgagactt 751
Query: 551 tgctggcttttagtgacaccggatagcttaggtagagggggccagcgatggctgcaggtt 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 tgctggcttttagtgacaccggatagcttaggtagagggggccagcgatggctgcaggtt 811
Query: 611 tcctagcatcctgtaatagctgctca 636
||||||||||||||||||||||||||
Sbjct: 812 tcctagcatcctgtaatagctgctca 837
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 125
Number of extensions: 33
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1037
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1027
Effective search space: 642902
Effective search space used: 642902
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no199_j08.g1 MSMg01no199_j08.g1 CHROMAT_FILE:
MSMg01no199_j08.g1 PHD_FILE: MSMg01no199_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:11 2005
(530 letters)
>mm_chr9_54450057_54450986
Length = 930
Score = 1015 bits (525), Expect = 0.0
Identities = 528/529 (99%)
Strand = Plus / Minus
Query: 1 caggccatccagagctagacagcaagaccttgcctgtcttaaaacaaggcagtaaagaaa 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 729 caggccatccagagctagacagcaagatcttgcctgtcttaaaacaaggcagtaaagaaa 670
Query: 61 ccactgaaatggccactcccttaagggaaggctcttattgtaaataagaaagagacgttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ccactgaaatggccactcccttaagggaaggctcttattgtaaataagaaagagacgttt 610
Query: 121 ccagaggcacctggaagagtccagagcagaggaaaaaaggaaacattgtggtcatggcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ccagaggcacctggaagagtccagagcagaggaaaaaaggaaacattgtggtcatggcca 550
Query: 181 gggctatctttgagagaagagaagtaagagagaacagtagaaatagtaagagatgggggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gggctatctttgagagaagagaagtaagagagaacagtagaaatagtaagagatgggggc 490
Query: 241 aggaagagtgagtagtgcaataagggtggcaggcagaggcagggaaacagggaaatggta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 aggaagagtgagtagtgcaataagggtggcaggcagaggcagggaaacagggaaatggta 430
Query: 301 tctgggaggaaggaggccaggaagtgaagagccaggatgctctgtgagggctttgagatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tctgggaggaaggaggccaggaagtgaagagccaggatgctctgtgagggctttgagatg 370
Query: 361 tagaacaggcactagtgagtgggctgagggactctgagatgtaactacaggagtgagtca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tagaacaggcactagtgagtgggctgagggactctgagatgtaactacaggagtgagtca 310
Query: 421 gtggggagccacgtcctttgcaagcgcctgaggaatgaatgctggcttttatctaaccac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gtggggagccacgtcctttgcaagcgcctgaggaatgaatgctggcttttatctaaccac 250
Query: 481 caaaaatccttccttggactcattgctgcctggatatacagacctaaga 529
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 caaaaatccttccttggactcattgctgcctggatatacagacctaaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
