BAC Information

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BAC

Clone NameMSMg01-199K03
Chromosome9 (Build37)
Map Location 85,589,611 - 85,589,802
singlet/doubletsinglet
Overlap geneIbtk
Upstream geneLOC666672, BC023892
Downstream gene4933431K14Rik, EG434426, 9330154J02Rik, Tpbg, 2610018I03Rik, Pgm3, Rwdd2, Mod1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199K03.T7 (MSMg01no199_k03.b1)MSMg01-199K03.TJ (MSMg01no199_k03.g1)
ACCAG386495AG386496
length740774
length of high quality
(start - end)
323 (45 - 367)197 (83 - 279)
definitionCHROMAT_FILE: MSMg01no199_k03.b1 PHD_FILE: MSMg01no199_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:16 2005CHROMAT_FILE: MSMg01no199_k03.g1 PHD_FILE: MSMg01no199_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTCCCAGTACTGTGGACTTGGTCCAGCGCCCATGGATGGGGAGGG
CATAGGCACTAGGTGTAAACTCATTACTGTTGTTTTGCTAAGTGGACATG
TTGTTTATACAAAGGCTAGTACTACCCTCATCATTGATCAAAGAAGCTTC
TCTTTGCTGCAAATGATGCTTAATTAGAGAACCCCATGACTAGTAAATGT
GCTAAGAGCAGGTGACTGACCATGCTGGACCTTAACCAAAATACACACGT
CATCCACTCTAAGGCTCGGGAACACCGCAGAAGAAGGAATAGAAAATAAT
AAGATCCAGGATGATGTTTAGAAGGGCATGAGACAACTGTTTTATGGACA
TGGCTATGAGATTAATAAACTCACAGCAGCTGTGGAGGGTTTTATATAGG
ATCCATACAAAGCTGAGACCATGAACAGTCAGTCATAGGTGGGGGAGAGG
CCCGTGGGGCCCAACCTTGCCTGAGGAAAATCATTGTCCTCAGTGACGTT
GCCATGAGTGAGTCACTCAAGTCCCCGTGGACAGCTCCACGCCCATGCCC
ACACGGTTGTCCCTGGTTAATCCCATTAGGTCTCAAGCAAAATCAAATAC
AAATTACTTACACCGTCGCGCATATGTTGCCGCACTCTTTTTTATTGCAT
TCTTTGATATGTAGAACACATCATTATTTCTTAATTCTTA
NNNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGTCTTCCTGCGTTCAC
CTCCCAAGAACAGGGATTATAGGCCTGTGCCATCACACCTGGCTTCTTAA
TTGTACTTGCAAATGAACATTCTTGATTGGTAGAAGGCTAGTAAAAAAAC
TTCAGGTGGTTGGATTCACACATATACCCTTCCAGAAAGTTGAGAGAGAG
AGAGAGGGTGTGTGTGTGTGGGGGGGGGNNNNNNNNTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTNTTNTNTTTNTTTTT
TTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTT
TTTNNTTTTTTTTTTTTNNTTTTGTTCCCCCCCCGGGGTGCTCCTGTGTC
TCCCTCTCCCTCTTTTTTTTTCTTTGTCCCCCCTCTTTTTTTTTTCTCTC
CCTTTTTTTCTCCTTGCCCTCCCTTCGCTCCTCGCGTTTTCTTCTCCTCC
TTTCTTCTTCCTTTTTTGCCCTTTCTTTCCTCCTTCCCCTTCCCTTTTCC
GTCTTTCTCTTTTCTTCTCTTTTCTTTTCTCTCGTGCTCTCCTTTCCCCT
TTTTCCCCCCCCTCTTTTTCCCCCCCTTTTTCTTTCCCTCTTTTTTCCTT
TTTTCCTCCCTCCTTTCTCCCCCCCCTTTCCCTCGCCTTTCCCTTCTTGT
CCTCCCCCTTTCTTTTTTGTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_k03.g1 MSMg01no199_k03.g1 CHROMAT_FILE:
MSMg01no199_k03.g1 PHD_FILE: MSMg01no199_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:16 2005
         (197 letters)



>mm_chr9_85589349_85589947
          Length = 599

 Score =  352 bits (182), Expect = e-102
 Identities = 189/192 (98%), Gaps = 2/192 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtcttcctgcgttcacctcccaagaacagggattataggcctgtgccatcacacctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ctgtcttcctgcgttcacctcccaagaacagggattataggcctgtgccatcacacctgg 395

                                                                       
Query: 61  cttcttaattgtacttgcaaatgaacattcttgattggtagaaggctagtaaaaaaactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 cttcttaattgtacttgcaaatgaacattcttgattggtagaaggctagtaaaaaaactt 335

                                                                       
Query: 121 caggtggttggattcacacatatacccttccagaaagttgagagagagagagag--ggtg 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 334 caggtggttggattcacacatatacccttccagaaagttgagagagagagagagtgggtg 275

                       
Query: 179 tgtgtgtgtggg 190
           ||||| ||||||
Sbjct: 274 tgtgtatgtggg 263


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 599
Length adjustment: 8
Effective length of query: 189
Effective length of database: 591
Effective search space:   111699
Effective search space used:   111699
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)