BAC Information

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BAC

Clone NameMSMg01-201E03
Chromosome9 (Build37)
Map Location 73,800,728 - 73,801,276
singlet/doubletsinglet
Overlap genenone
Upstream geneDyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885, EG436081, Unc13c
Downstream geneWdr72, Nr1h2-ps, LOC100040764, Onecut1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-201E03.T7 (MSMg01no201_e03.b1)MSMg01-201E03.TJ (MSMg01no201_e03.g1)
ACCAG386886AG386887
length1,1761,192
length of high quality
(start - end)		417 (29 - 445)601 (70 - 670)
definitionCHROMAT_FILE: MSMg01no201_e03.b1 PHD_FILE: MSMg01no201_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:21:16 2005CHROMAT_FILE: MSMg01no201_e03.g1 PHD_FILE: MSMg01no201_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:21:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATCTATGGCCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCC
TGATTTGATTCAATAATTTTAGAAAGAAAGTTTTTTTAAAATATATTTTT
ATTAGGTATTTTCCTCATTTACCCTTCCAATGCCATCCCAAAAGTCCCCC
ATACCCTCCCCCCCCCCACCTCCCCTACCCACCCACTCCCACTTTTTGGC
CCCGGCATTCCCCTGTACTGGGGCATATAAAGTTTGTAAGTCCAATGGGC
CTCTTTTTCCAGTGATGGCTGACTAGGCCATCTTTTGATACATACGCAAC
TAGAGTCAAGAGCTCCAGGGTAGTGGTTAGTTCATAATGTTGTTCCACCT
ATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCC
ATTGGGGGCCCTGTGATATATCCAATAGCTGACTGTGAGCATCCATTTTT
TTTTCCCCCCCCCCCCAGCATAGCCTCACAAGAGAGAGAAATATCAGGGT
CCTTTCAGCAAAATCTTGCTAGTGTATGCAATGGTGTCATCATTTGGAGG
CTGATCATGGGATGGATCCCTGGGTATGACAGTCTCTAGATGGTCCATCC
TTTCGTCTCAGTTCCAAACTTTGTCTCTGTAACTCCTTCCATGGGTGTTT
TGTTCCCAATTCTGAGAAGGGGCAAAGTGTCCACACTTTGGTCTTTCTTC
TTCTTGAGTTTCATGTGTTTTGCAAATTGTATCTTATATCTTGGGTATAC
TAATTTTCTGGGCAAAATCCATTTATCAGTGAGTACTTATGTGAGTTCTT
TTGTGATTGTGTTACCTGACTTCGTGATGAAGCCTTCCAGGTCCTTCCTT
TTGCTTAACAATTCCTAAATTCCTTCTTTTAATAGCTGACTATCACCCCT
TGCGTAATGTACCAATTTTTTCGTACCATCCCCCGTTGAGGTTTTCTGAT
TCTTTCTCCCCTTCGGCTTTTAATCTAAATCTTCCTTGTAATCATTTTTT
TTTTGTTATTTCTTCCTCCTTTCTTTTTCCTTTTCTCTCTCTCTCCCTTA
ATATATCTATCTTCTCTCTCTTTCCCTTTTTCTTTTCTCTTTTCTTCTCC
TCTTTTCATCTTTTTTCTCTTCAACCTTTTCTACTCTTTTTTCCCTTTTC
TTCCTCCTTTTTTTCTCTCTCCTCTT

NNNNTTCACACGGNTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCTTTTTTGTATCTTAGAGAATTCAGAGGAA
GTAACGAGGTCCAAGTTATTAAATTGGACCGAACTCTCTATAATTACAGC
TGCCCTCAAGTCTAGGAAATTGAAATAAATTAACACAGATGTTTTCTCCC
ATGACTAAGAACCCAATGGTAGGATGGCCAACCTGCTCAAGATGGGAATT
AAACCTTACCTGAAGTCTTCTCTTTCATAACGACAAATTCTTCTACTGGG
TGCTTAGCTTTTCCAGTATCTGTTACAAGAAATGAGAATTTATTTGTTTG
GTGACATAGATAGTTTTAGAATTACCCTTTAATTAGTAAGAAATTGCTTC
TATTTAATCATTGTCTTTCTGCCCTGTATCAAGAGATTCCAACAATAGTC
ATTCTATCTCACAGTGCCAATCATTTCTTCCCTTGAGACTTTCAGATATT
CAAGATACTATGTGTGCTGCTTCCTTCCTACTGATATAACTTTGAAGTTT
ATAGCTATAAGAATGGTAATTTTGACTCACTGATATACTACAGGGCCTGT
TTTTGCAAAGCATCAGTTGATATATCTATCTATCTATCTATCTATCCATC
TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTC
TCTATGCGCATGCACGTGTGCGTGTGTGTGTTTGCTTTTTTTTTTTTTTT
CATTTTTTTTTTCTATTCTTTTCTTTTTTTCTTTTCATCCCTCATTTTTT
TTTTTTTTTTTTTTATTTTTATTTTTTTATTTTTATTTCTTTCCTCTCTT
TTTCATTTTTTTTTTTTTTATTTTTTATTTCTTTTCCTTTTATTTTTTTT
CTTTTTTTATACTCTTATTTTTTTCTTTCTTTTTTTTTCTTTTTTTTTTT
CTCTTTTTTTTTCTTTTTCTTCATTTTTTTTTTTTTCTTTCTTATTTTCT
TATCTTACATTTTTATTCTATTTCTTTTTTTTCCTCTACTTTTTCTTTTT
TTCTTTTTCTTTTTTCTTTCTTTCTTTCTCATTTCTTTCTTTTACTTTTT
TCTCTTTTTTCTTCCTATTTACTTTTCTACCTATTTTCTTCTTTTATTAT
CTATTTTTCTTTTTATTTATTTTCTTACTTTTTATTTCTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no201_e03.g1 MSMg01no201_e03.g1 CHROMAT_FILE:
MSMg01no201_e03.g1 PHD_FILE: MSMg01no201_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:21:17 2005
         (601 letters)



>mm_chr9_73800524_73801524
          Length = 1001

 Score = 1000 bits (517), Expect = 0.0
 Identities = 541/549 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   ttttgtatcttagagaattcagaggaagtaacgaggtccaagttattaaattggaccgaa 64
           ||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||| |||
Sbjct: 753 ttttgtatcttagagaattcagaggaaataactaggtcaaagttattaaattggactgaa 694

                                                                       
Query: 65  ctctctataattacagctgccctcaagtctaggaaattgaaataaattaacacagatgtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 ctctctataattacagctgccctcaagtctaggaaattgaaataaattaacacagatgtt 634

                                                                       
Query: 125 ttctcccatgactaagaacccaatggtaggatggccaacctgctcaagatgggaattaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ttctcccatgactaagaacccaatggtaggatggccaacctgctcaagatgggaattaaa 574

                                                                       
Query: 185 ccttacctgaagtcttctctttcataacgacaaattcttctactgggtgcttagcttttc 244
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 573 ccttacctgaagtcttctctttcataacgacaaattcttctacggggtgcttagcttttc 514

                                                                       
Query: 245 cagtatctgttacaagaaatgagaatttatttgtttggtgacatagatagttttagaatt 304
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 cagtatctgctacaagaaatgagaatttatttgtttggtgacatagatagttttagaatt 454

                                                                       
Query: 305 accctttaattagtaagaaattgcttctatttaatcattgtctttctgccctgtatcaag 364
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 453 accctttaattagtaagaaattgcttctagctaatcattgtctttctgccctgtatcaag 394

                                                                       
Query: 365 agattccaacaatagtcattctatctcacagtgccaatcatttcttcccttgagactttc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 agattccaacaatagtcattctatctcacagtgccaatcatttcttcccttgagactttc 334

                                                                       
Query: 425 agatattcaagatactatgtgtgctgcttccttcctactgatataactttgaagtttata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 agatattcaagatactatgtgtgctgcttccttcctactgatataactttgaagtttata 274

                                                                       
Query: 485 gctataagaatggtaattttgactcactgatatactacagggcctgtttttgcaaagcat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gctataagaatggtaattttgactcactgatatactacagggcctgtttttgcaaagcat 214

                    
Query: 545 cagttgata 553
           |||||||||
Sbjct: 213 cagttgata 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space:   585681
Effective search space used:   585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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