BAC Information

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BAC

Clone NameMSMg01-202K15
Chromosome9 (Build37)
Map Location 71,113,479 - 71,113,596
singlet/doubletsinglet
Overlap geneAldh1a2
Upstream geneMyo1e, Ccnb2, Rnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1, Lipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660
Downstream geneGrinl1a, AA407270, LOC547043, LOC100040537, Cgnl1, Tcf12, EG666001, LOC665959, EG665964, LOC665970
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202K15.T7 (MSMg01no202_k15.b1)MSMg01-202K15.TJ (MSMg01no202_k15.g1)
ACCAG387735
length707782
length of high quality
(start - end)
---118 (250 - 367)
definitionCHROMAT_FILE: MSMg01no202_k15.b1 PHD_FILE: MSMg01no202_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:33 2005CHROMAT_FILE: MSMg01no202_k15.g1 PHD_FILE: MSMg01no202_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXX
TGTGTTTGTTATTGTTGATTTAATTTTCTTCTTTTCCCCCCTATTTCTCT
TCCTAGAATGAAGTGGGTAGTCTGGNGGCCGCCTGTTTCCAAAAAGGAGG
NGAANTANAGAAGTTTCCGAGAGAAGTGTNNAATAGGTTGGTTTGTGGAT
ATTANTTTCTGGTTTGATTTTCCCTGGATGGAGGTGTTTCGTTAGAATCT
AGTCTGAAGTAAATACTTTTAAAAGAATAGACTCAGTGCATCCAGAAGAA
TATGTCTCTTTCACACTCGTATTTTGGGTTGCATGTTCCATACATTTGAT
AGTAAGTAAAAGTCAAATAAAAGTTTGGAAGTAGAGAATGTAAATTAGAA
TGCAAGTCTATTTAGCTTATATTTTTTTAGCAAGAGACCGTTTAACTAAA
TATCATTATTTTTTTTATTTCCGCACCCCGGAGATGTCTAGATTTCTCTG
GTAGGTATGGTGGTTTCCGCCAAAAAAAAAAAAATGATTTGGGAGGTGGG
GAAATAAAGCCAATGATAATGAGCTGGGTCATGAATGTAAATTGTACATT
AGATCTAATATATTTCATCAGTTTAAAGAGATTGAAATATGTGGAATTAG
TAATTTTAAAGAGAGGCTTATACGATGTTTTAATTTTATGGCTTAAATAA
GAAGGATTATTAATTTAATTGCTTTTCGATTTACTATTCTGAAGTGAAGG
AAGAAGATTAAAATATTTAAGGGGTGGGGAGATGGAATGTTGCTAATGAG
GGCTATTTATTTTTTTAGAGTTTGGTGGTCGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_k15.g1 MSMg01no202_k15.g1 CHROMAT_FILE:
MSMg01no202_k15.g1 PHD_FILE: MSMg01no202_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:33 2005
         (118 letters)



>mm_chr9_71113279_71113796
          Length = 518

 Score =  197 bits (102), Expect = 1e-55
 Identities = 114/118 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatgtctctttcacactcgtattttgggttgcatgttccatacatttgatagtaagtaa 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 318 atatgtctctttcacactcgcattttgggttgcatgttccatacatttgatagcaagtaa 259

                                                                     
Query: 61  aagtcaaataaaagtttggaagtagagaatgtaaattagaatgcaagtctatttagct 118
           |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 258 aagtcaaataaaagtttggaagcagagaatgtaaattagcatgcaagtctatttagct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 118
Length of database: 518
Length adjustment: 8
Effective length of query: 110
Effective length of database: 510
Effective search space:    56100
Effective search space used:    56100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)