BAC Information

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BAC

Clone NameMSMg01-203C15
Chromosome9 (Build37)
Map Location 109,720,380 - 109,721,047
singlet/doubletsinglet
Overlap geneSpink8
Upstream geneNckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik
Downstream gene3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203C15.T7 (MSMg01no203_c15.b1)MSMg01-203C15.TJ (MSMg01no203_c15.g1)
ACCAG388036AG388037
length710995
length of high quality
(start - end)		665 (46 - 710)---
definitionCHROMAT_FILE: MSMg01no203_c15.b1 PHD_FILE: MSMg01no203_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:14 2005CHROMAT_FILE: MSMg01no203_c15.g1 PHD_FILE: MSMg01no203_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGACAGCCACGGCTATGTAGAGAGATCCTGTTGTTCTATGACT
TGAAGTTCTATGACTGAACTATAATTAATTATGTATGATTCTTCTATAAT
TACTTCCATGTAGAAAAGTGAAACTCAACATCCTTTAAGGTATCTCAATA
TTAGTATTACAGATAATTTATAACCTAAAATATATTTTCTTAACCAACTA
ATACAAATACAAGTGGCAGGGATGGTTGAGGGTGGCTCAGAAGAGTGCTT
GCCTAGCATGCACAAAGCCCTGGGCTCCATCCCTAGCACCACATAACTGG
ACACAAGCACACATCTGTAATACTAGCACATTATTAGAAGCCAGCGGGAG
GTAGAGGAAGCAGGCTCACAAGTTCATGGTCATCCTGGACTTATACAGTA
ATCCCAAAGTCAGCCCAGACTACACAGACCCAAGAGAGACGGGCAGGGGG
GCTGGAGAGATGGCTCAGTGGTTAAGAACACTGACTGCTCTTCCAGAAGT
CCCAAGTTTGATTTCCAGCAACCACATGTTGGCTCACAACCATCTGTAAT
GGGATCTGATGCCTTCTTCTGGTGTGTCTGACACACCAGTGTACTCATAT
ACATACAACAAATAAAATCTTTTAAAAAAAAAGAAAGGAAGGAAGGAAGA
TAGATAGATA

CACAATGGTCTCACATATACACTTTTAACGGTCCTTTTATATCCCNCCAA
CAGAGATTTGGGAGAAGAGTATACGGGTGTCGGGAGAAAGGTTTGCGATT
TCTATTAAGGAGCTTGTTAAGGAGAAGAAAATAAGGGTGTAGCGAGAGTA
GATTAGGAAAGGTTGGTTTTTACCCTAAACAATGAGATGATGGGTTTAGG
GGCTGTGTTACAGGAATGGGAAAAATAAAATTAAAATAGAAGGAAAGGTT
CGGTATTTAGAAATATGGGTGTATATGGTTGTTTTGGGTTTTTGGGTTGT
TTATGAGTTTTTTTGTCTTATTGGATGGGGTGATATAGGTATTATTATAT
GTTATTTTGGGAGTTTATTTGGATTGGTTTATAATTTAGTGAGTAATTTT
TTTTTTTTTATATGATAGAAAGATAGGGGAATAATGTTGACGGAAGGTTT
GTAGGGTTGCGTTTCCCCCCGCCCCCCCACCCGAAATTAAGAGGTAATTT
GGTGTGTAGTAGACATGATGGTGGGTCTGCCCGCCCCCGTTGATAAAAAA
AAAAAAAAATCTTATTGGTGGGGGGGGGTGGGATATATATCAACCATATA
TATAATTGGGAGAGGTATTCGAAGCGGGTGTTATATTTTATTCGTGGGTT
TTTCATATAATATTTGGTATGCGGGAATATGAAACGTTATATAGGGGGGA
TTTATTGGTTTTTTGGGAATAATAAACTGAATATTTTTTTTTGTATGCGC
TGATTTCGTATATATATGGGTTGTTGTTAGATAGTATTATGGGTAGTGAT
AAGGTTTGTTGGATTCGAAATATGGAGAGGCAGAATAAGAGGGGGTTGTG
ATTGTTGGAATATTTGTGTTTAGGGGGGAATTAAACGGATTCCGGTTAGG
ATGAGATAAGTAATTTAAGGGGGGTTTATGGGTTTTGGGTTAGGGGGGAA
TTTTTGTTAGTTAAGGGGTGGGTTAGTTTAGGGGCGGTATTAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_c15.b1 MSMg01no203_c15.b1 CHROMAT_FILE:
MSMg01no203_c15.b1 PHD_FILE: MSMg01no203_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:14 2005
         (665 letters)



>mm_chr9_109720176_109721240
          Length = 1065

 Score = 1180 bits (610), Expect = 0.0
 Identities = 651/668 (97%), Gaps = 7/668 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggacagccacggctatgtagagagatcctgttgttctatgacttgaagttct 64
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 205 gaattccaggacagccagggctatgtagagagatcctgttgttctatgacttgaagttat 264

                                                                       
Query: 65  atgactgaactataattaattatgtatgattcttctataattacttccatgtagaaaagt 124
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 265 atgactgaactataattaattatgtatgattcttctataattacttacatgtagaatagt 324

                                                                       
Query: 125 gaaactcaacatcctttaaggtatctcaatattagtattacagataatttataacctaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 325 gaaactcaacatcctttaaggtatctcaatattagtattacagataatttacaacctaaa 384

                                                                       
Query: 185 atatattttcttaaccaactaatacaaatacaagtggcagggatggttgagggtggctca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atatattttcttaaccaactaatacaaatacaagtggcagggatggttgagggtggctca 444

                                                                       
Query: 245 gaagagtgcttgcctagcatgcacaaagccctgggctccatccctagcaccacataactg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaagagtgcttgcctagcatgcacaaagccctgggctccatccctagcaccacataactg 504

                                                                       
Query: 305 gacacaagcacacatctgtaatactagcacattattagaagccagcgggaggtagaggaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gacacaagcacacatctgtaatactagcacattattagaagccagcgggaggtagaggaa 564

                                                                       
Query: 365 gcaggctcacaagttcatggtcatcctggacttatacagtaatcccaaagtcagcccaga 424
           ||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcaggctcagaagttcaaggtcaccctggacttatacagtaatcccaaagtcagcccaga 624

                                                                       
Query: 425 ctacacagaccc--aagagagacgggcaggggggctggagagatggctcagtggttaaga 482
           ||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctacacagaccctaaagaaagacgggcaggggggctggagagatggctcagtggttaaga 684

                                                                       
Query: 483 acactgactgctcttccagaagtcccaagtttgatttccagcaaccacatgttggctcac 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acactgactgctcttccagaagtcccaagtttgatttccagcaaccacatgttggctcac 744

                                                                       
Query: 543 aaccatctgtaatgggatctgatgccttcttctggtgtgtctgacacaccagtgtactca 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aaccatctgtaatgggatctgatgccttcttctggtgtgtctgacacaccagtgtactca 804

                                                                       
Query: 603 tatacatacaacaaataaaatcttttaaaaaaaaa-----gaaaggaaggaaggaagata 657
           ||||||||||||||||||||||||| |||||||||     ||||||||||||||||||||
Sbjct: 805 tatacatacaacaaataaaatctttaaaaaaaaaaaaaaagaaaggaaggaaggaagata 864

                   
Query: 658 gatagata 665
           ||||||||
Sbjct: 865 gatagata 872


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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