BAC Information

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BAC

Clone NameMSMg01-203D24
Chromosome9 (Build37)
Map Location 61,655,518 - 61,826,027
singlet/doubletdoublet
Overlap geneRplp1, Kif23, Paqr5
Upstream geneUaca, ENSMUSG00000052143, A430102L10, LOC100040481, Tle3, LOC100039851
Downstream geneGlce, Spesp1, LOC100039897, Anp32a, Coro2b, Itga11, EG665478, Fem1b, Cln6, Calml4, Pias1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203D24.T7 (MSMg01no203_d24.b1)MSMg01-203D24.TJ (MSMg01no203_d24.g1)
ACCAG388092AG388093
length725791
length of high quality
(start - end)
323 (32 - 354)219 (130 - 348)
definitionCHROMAT_FILE: MSMg01no203_d24.b1 PHD_FILE: MSMg01no203_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:21 2005CHROMAT_FILE: MSMg01no203_d24.g1 PHD_FILE: MSMg01no203_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,655,518 - 61,655,830)(61,825,810 - 61,826,027)
sequence
GCGGCCGCTATACGACTCCTATATTCAGAGGATCCGCGGAATTCCTGAAC
TCTTCTCTGTCTGGGAGTGGCAGGAGCCTTGGGTGGCAAAGACTCGAGGG
TTAGGATGTTAGGCCATGGCTAAAGTCATTGGGTACTGTCTCCGGTGTTC
CAGCTCAAATCTGGTGTCTAGGACTGGTGATTGTGGCACCGGAAGCCCAA
GCCTTGTGCCTTCCCCAGTCTACAAATAGTCTGTGTACCACACACCCCAT
CAAGTACAAAGAGGGACTCTACAGTGTTCCATGAAGAACCAAGACACAGC
CTGTTCCCCCACCAATCTGCCACATGCCCTCCCACAAACCCAGCCTTGTC
CTTTTATAGTTTCCCCCCTCACCCAGGCCCATCCTTGGTGGCACAGAAGA
AGATCTCCCCCCACGACAGACTTCTATAAATAGGTACATCTTTCTGGGAA
GGTCACCACTCAGAGCCACGAGAGCCCAAAATTCTCTAAAGACAAACATG
GGACATGAGCTGAGACCCAGCCACCTCACTTCTTGAGGTCAGGTCGGTCG
GTGGCCACAGCTGGCTGGTCAGCTGCTGAATGTCCTTCGGGCTGCATAAA
TACTTGCACACTGCGTTTTCTTTTCAAGGGGGTTGCCAGTGTGTACACAG
AGGAAAAACGGTTAGCTGGAGGCCCAAGAGACATGCTAGGGCTACCTTCT
TCCCAACTCTGACCCTGTAGTCCTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGACCAGAACAGCGAGAGGTGGG
GGCAGCTGTATTCTGTACAGTTTTTTCATGTGGGTGGAACCCAAGGCTTC
ATGCGTGCTAAGCCAGTGGGGCTCCTGCAGCTTCCCCTCCTCCCACAAGA
AAGCAAAGTGGAAGCCTGAGAAAGTGTTGTGACTTGACTTCCCTCATGGA
GACTAAATACAGAGTGCCACTGTAATCATTTCTGTTAGCCCACTGCTGTA
TAATTAGTTCCTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTGA
CAAANNAANATTTTTAANATCCCTCCCAAACAAACACCCCAAANNTAATA
TTTTTTTTTTTTTGGGGGGCGCCCCCCAAAAAAAAAAAAAAAAATTTGGG
GGGGGGGGGGGGTTGTTTTCTTTTTTTTTTAACCTTCTTTTTTCAATATT
CGTTTAACTATTCCACATCTATACCCTTCAATTTCATTTCTCCTTTAATC
TGAACCATTTTTCTTATCTTTTTTTATTTTCATACTTTGTTCCATCTTAT
ACTGCCTTCCTTTTACCTCACATTTGTTTTTTTTCCTTCCATATTTTCCC
TTTTCTCCCCGTTATATTATCTCTCTACTGCTTCTGTACTCACTTTATTT
ACCTTCCCTCGTTCACATTATCTTATTTTCACCTTCTCCTGTTTATCTAA
CACCCGTACCACTCACATTTTATATATAATTTTTATATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_d24.b1 MSMg01no203_d24.b1 CHROMAT_FILE:
MSMg01no203_d24.b1 PHD_FILE: MSMg01no203_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:21 2005
         (323 letters)



>mm_chr9_61655311_61656033
          Length = 723

 Score =  536 bits (277), Expect = e-157
 Identities = 304/313 (97%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattcctgaactcttctctgtctgggagtggcaggagccttgggtggcaaagactcgag 67
           ||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 208 gaattcctgaactcacctctgtctgggagtggcaggagccttgagtggcaaagactcgag 267

                                                                       
Query: 68  ggttaggatgttaggccatggctaaagtcattgggtactgtctccggtgttccagctcaa 127
           ||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ggttaggacattaggacatggctaaagtcattgggtactgtctccggtgttccagctcaa 327

                                                                       
Query: 128 atctggtgtctaggactggtgattgtggcaccggaagcccaagccttgtgccttccccag 187
           ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 328 atctggtatctaggactggtgattgtggcaccagaagcccaagccttgtgccttccccag 387

                                                                       
Query: 188 tctacaaatagtctgtgtaccacacaccccatcaagtacaaagagggactctacagtgtt 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tctacaaatagtctgtgtaccacacaccccatcaagtacaaagagggactctacagtgtt 447

                                                                       
Query: 248 ccatgaagaaccaagacacagcctgttcccccaccaatctgccacatgccctcccacaaa 307
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 448 ccatgaagaaccaagacacagcctgttcccccaccaacctgccacatgccctcccacaaa 507

                        
Query: 308 cccagccttgtcc 320
           |||||||||||||
Sbjct: 508 cccagccttgtcc 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no203_d24.g1 MSMg01no203_d24.g1 CHROMAT_FILE:
MSMg01no203_d24.g1 PHD_FILE: MSMg01no203_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:21 2005
         (219 letters)



>mm_chr9_61825646_61826264
          Length = 619

 Score =  414 bits (214), Expect = e-120
 Identities = 217/218 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgggtggaacccaaggcttcatgcgtgctaagccagtggggctcctgcagcttcccctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtgggtggaacccaaggcttcatgcgtgctaagccagtggggctcctgcagcttcccctc 323

                                                                       
Query: 61  ctcccacaagaaagcaaagtggaagcctgagaaagtgttgtgacttgacttccctcatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctcccacaagaaagcaaagtggaagcctgagaaagtgttgtgacttgacttccctcatgg 263

                                                                       
Query: 121 agactaaatacagagtgccactgtaatcatttctgttagcccactgctgtataattagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agactaaatacagagtgccactgtaatcatttctgttagcccactgctgtataattagtt 203

                                                 
Query: 181 cctgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtg 218
           ||||||||||||||||||||||||||||| ||||||||
Sbjct: 202 cctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 165


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 619
Length adjustment: 9
Effective length of query: 210
Effective length of database: 610
Effective search space:   128100
Effective search space used:   128100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)