BAC Information

Click to search

BAC

Clone NameMSMg01-203E10
Chromosome9 (Build37)
Map Location 28,571,000 - 28,571,234
singlet/doubletsinglet
Overlap geneOpcml
Upstream genenone
Downstream geneHnt, LOC625222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203E10.T7 (MSMg01no203_e10.b1)MSMg01-203E10.TJ (MSMg01no203_e10.g1)
ACCAG388109AG388110
length790759
length of high quality
(start - end)
239 (186 - 424)289 (75 - 363)
definitionCHROMAT_FILE: MSMg01no203_e10.b1 PHD_FILE: MSMg01no203_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:23 2005CHROMAT_FILE: MSMg01no203_e10.g1 PHD_FILE: MSMg01no203_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTCCTTCTCTTTCCCCCCCCCCCTATTTTCTNNNCCCNNCNNNTTTT
NNNCCATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCATTGTTATTAGCCTAGAAAGCTCAAGAGGCATTCTT
GCATGAATAAGACTTAGATATTAGATATATAATCCCTCTTGTAAGGCAGG
TTAAAAATACCAATAAGTTACCTGTTTATTCGGTCAGTGCATCATCTACC
TGTGTTTATATATACATCAATCAGATAGACTTTTTAAAAAATGATTTTCC
ATTATTTCATTTTATTTAAAGATTGATTTTTAAGTCTCTGCGTTTGTGTG
CATGTGTTCACATGAATACAGATGCCCTCATAAACTTGATGTAGCAAGTA
ACTCTAGACAGTTTATAGACTGTGTTTGTACAGCCCGACGCGGGTGATGG
AACCAATCTTGGTTTCTCTTCAAGAACCCCCCACGCACATAACTGCTAAT
CCATCTCTCTAGCATCAACAACCATATCTTAAACTAAAATTAGGAGAGCC
AGCATTATGACATGAGTTGGCTGTAAATAGGTTTATAAGGGAATTCATAT
GAAGCTGTACATTACTAACTACAATCAAAAAATTGGAGATGATGCTTGCT
AAACTCCGAGGAAGAACCAGCTTCATCATTCCTCGGAAGAAAACCATTTT
GTGGATCTTTTCTCCGAAGTTATCACCAAGTTCACAAAGAGACTAAGATT
TTAATTCTAGACTAGTACGACATTCATTGCCATGGCTGTT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCCTGTACTGGGGCATATAATCTTCA
CAAGACCAAGGGCCTCTTGTCCCATTGATGGCCTACTCGGCCATCCTCTG
CTACATTTGCAACTAGGGACACAAGCTCTGGGGGGTACTGGTTAGTTCAT
ATTGTTGTTCCTCCTATAGGGCTGCAGACCCCTTTAGCTCCTTGGGTACT
TTCTCTAGCTCCTTCATTGGGGGCCCTGTGTTCCATCCAATAAATGACTG
TGAGCATCCACTTCTGTATTTGCCAGTCACTAGCATAGCCTCACAAGAGA
TAGCTATATCATTGTCTTGCCACCCAAATTTTGCTGGCATATGCAATAGT
GTCTGGGTCGGCCCCCCCCCCCATGGGATGGATCCCCAGGTGGGACAGTC
TCTGTACGGCCTTTCCTTCCACCTCAGTTCTGAACTTTATCTCTGCCATT
TCTTCCTTGCGCATTTTGCTCCCTTTTTCTCCCATGTATCGCTGCCCTTT
TCCCCCTTTTTTTCCCTTCCTTCTTGTCAATATTTTCTCTTTTCCTTTTC
CCCCAATACCATCATTATCCTGAAACTCCTCTTTATCCCGCCTGAACTTG
TCTAATCTTAAGCATTGGTTTTACCCTGCCATCCCTCTCTCACCTTCGCT
TTTCCTTTTCCCCTCCCCTTTTTTCCCCAGTTTCCTTCTATGTCTTCTCT
TCCCACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_e10.b1 MSMg01no203_e10.b1 CHROMAT_FILE:
MSMg01no203_e10.b1 PHD_FILE: MSMg01no203_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:23 2005
         (239 letters)



>mm_chr9_28570800_28571438
          Length = 639

 Score =  439 bits (227), Expect = e-128
 Identities = 233/235 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcttgtaaggcaggttaaaaataccaataagttacctgtttattcggtcagtgcatcat 60
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 201 ctcttgtaaggcaggttaaaaataccaataggttacctgtttattcggtcagtgcatcgt 260

                                                                       
Query: 61  ctacctgtgtttatatatacatcaatcagatagactttttaaaaaatgattttccattat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctacctgtgtttatatatacatcaatcagatagactttttaaaaaatgattttccattat 320

                                                                       
Query: 121 ttcattttatttaaagattgatttttaagtctctgcgtttgtgtgcatgtgttcacatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcattttatttaaagattgatttttaagtctctgcgtttgtgtgcatgtgttcacatga 380

                                                                  
Query: 181 atacagatgccctcataaacttgatgtagcaagtaactctagacagtttatagac 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atacagatgccctcataaacttgatgtagcaagtaactctagacagtttatagac 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)