BAC Information

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BAC

Clone NameMSMg01-203J05
Chromosome9 (Build37)
Map Location 118,590,542 - 118,590,780
singlet/doubletsinglet
Overlap geneItga9
Upstream geneLOC665840, LOC100039650, LOC100039681, Azi2, 2010110K16Rik, Eomes, Golga4
Downstream geneLOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1, Myd88, Acaa1a, Xylb, Acvr2b, Endogl1, Scn5a, Scn10a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203J05.T7 (MSMg01no203_j05.b1)MSMg01-203J05.TJ (MSMg01no203_j05.g1)
ACCAG388290AG388291
length745766
length of high quality
(start - end)
50 (82 - 131)239 (131 - 369)
definitionCHROMAT_FILE: MSMg01no203_j05.b1 PHD_FILE: MSMg01no203_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:46 2005CHROMAT_FILE: MSMg01no203_j05.g1 PHD_FILE: MSMg01no203_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCTCTACAATCTCCTTGGTCATATCCGCCCCTCACTTCTCCTGGA
TCCCTCCTCCCCATTTCCCTCGTCCTTCGCATCGCCGCTTCTCCCCTATT
CCCCTCTGCCTCAAGTTCATTTTCTTTTCTTAGAAAAAAACCTTTAAATT
AAAGTGACTTGATATTTGGTTTAGAGACAGGTTCTTTAGATAGCTGATGG
TCCTGGAGGTAAACCAGACTGGCTTCGAACTTACAGAGATCCCCCTGCCT
CTGGTTCCTCTGGGCTGAGATTAAATGTGTGTGCCACAGTGTCTAAATCC
TTTTTGGCTTAAAAAAAAAAAATTACGCGCTGAGTCGGGTGCTTCCCATA
TGGACAGAGAGGGCGGAGGACCCTCCACTGGATAATGGGCAAACAATCAA
GGGTCAGCTCCTTGGAGGAAAATGATTCTCTGCGTCCACTCCTCGGAAGA
CATCCTTGGACAACAGGTCCTGATGGACAAGTGAGGGATTGTGGGCCCCT
CCCCCAACGAGGATGGCAGGGTGACTGGCTTGATCCAGTGCACTGTGCAG
GCTCTGACAGGCGCTCTGAGTTCGAGAGAGCATGGTTTCCCTCGATTTCA
GAACATACTTTTTCCCGGAAGCCCACTGAACGCGTCTTACCGTCTTTGCA
GCCCGGGTCAATTCTCTGTACCTAGGAAAAATGGAGGAGGGCGTN
CGATACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGACTCAGAACCTTGTGGAAAGCAGCC
CCAGCTGTCCTTTGGTTCATGTCCACCGCTGACAAAGGCCCAGCCTTGTG
GTCAGGGAGCCCTTCCTACTGCTGCTGTCTGGCTGTGTAATGACTTTGTA
AGAATTACAGCCACATTGTCTTAAGTGTCAGCCAACCACATGTGGGTACG
GAGGCCTGGAAACAGGGCTGGATATGTAAAATCCATAGCAGATTTTAAAA
GACCTAATTTTTAAAAATTAACTCATTAATAACTTTTATATTAGTTATAC
ATTAAAATGATAAAATGTTGTTTTATCTTGCCACTACACGTCATGAAGAT
TAACTTCATCTTGTTTATGCACACCTTTCTGTAGTTACTAGCACATACTA
TTATATATAAATATATCATTAAACAATGATTAAGCTTTAATCATTAAGCA
ACAGCAGATATGATTTTACTTGAATATATAATTTACTGTAATCTGTGTTT
GGTGGATTGCTTTTTAGTGATTTTGAATCCTATCTTTTGCCATGGATATG
TTTTTTTCTTCATCTGACTTCTGTTAAATTGAATTTCCTTACTGTTACCG
GAATCTACCACTTTCAAATCTTTCTCTTTCCCTTTGTTAATTACAACCGG
TTAAATTATTTTTTAAAAACCATCTTTTATTCTTACTCTATTTTTACTTA
CTTTTTATCTGGGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_j05.g1 MSMg01no203_j05.g1 CHROMAT_FILE:
MSMg01no203_j05.g1 PHD_FILE: MSMg01no203_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:46 2005
         (239 letters)



>mm_chr9_118590445_118591083
          Length = 639

 Score =  447 bits (231), Expect = e-130
 Identities = 237/239 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacaaaggcccagccttgtggtcagggagcccttcctactgctgctgtctggctgtgtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gacaaaggcccagccttgtggtcagggagcccttcctactgctgctgtctggctgtgtaa 277

                                                                       
Query: 61  tgactttgtaagaattacagccacattgtcttaagtgtcagccaaccacatgtgggtacg 120
           || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 276 tgtctttgtaagaattacagccacattgtcttaagtggcagccaaccacatgtgggtacg 217

                                                                       
Query: 121 gaggcctggaaacagggctggatatgtaaaatccatagcagattttaaaagacctaattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaggcctggaaacagggctggatatgtaaaatccatagcagattttaaaagacctaattt 157

                                                                      
Query: 181 ttaaaaattaactcattaataacttttatattagttatacattaaaatgataaaatgtt 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 ttaaaaattaactcattaataacttttatattagttatacattaaaatgataaaatgtt 98


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)