Query= MSMg01no203_n11.b1 MSMg01no203_n11.b1 CHROMAT_FILE:
MSMg01no203_n11.b1 PHD_FILE: MSMg01no203_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:09 2005
(661 letters)
>mm_chr9_10776930_10777990
Length = 1061
Score = 1091 bits (564), Expect = 0.0
Identities = 594/604 (98%), Gaps = 1/604 (0%)
Strand = Plus / Minus
Query: 59 caggtcacatatgatttctcccgtgttttattatctgttattttgcaaatcagcttgtga 118
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1061 caggtcacatatgaattctgaagtgttttattatctgttattttgcaaatcagcttgtga 1002
Query: 119 tt-aaaaaaaacttttcaaacagttttatagttatcatacagttataaaaatattgtagt 177
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1001 ttaaaaaaaaacttttcaaacagttttatggttatcatacagttataaaaatattgtagt 942
Query: 178 aattttatattctatgattttactgaatcctttcattagttctaacagcttttgattcag 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941 aattttatattctatgattttactgaatcctttcattagttctaacagcttttgattcag 882
Query: 238 tactctcaagtttctatgtagagtcttatcaatcacattttattttcttccttctgattg 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 tactctcaagtttctatgtagagtcttatcaatcacattttattttcttccttctgattg 822
Query: 298 gaaaccagctgcttccttgtgctttctctggccacggcatctagcattgtgtattactgg 357
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 821 gaaaccagctgcttccttgtgctttctctgggcagggcatctagcattgtgtattactgg 762
Query: 358 cagagtgaacacactcatccatgtcttgttcttggttttaggaaaaaaatgttcagcttt 417
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 cagagtgaacacacttatccatgtcttgttcttggttttaggaaaaaaatgttcagcttc 702
Query: 418 tcatgagtaggtgtgatagtattcttgactctcaggtgcagagaagcagttcttctatgc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 tcatgagtaggtgtgatagtattcttgactctcaggtgcagagaagcagttcttctatgc 642
Query: 478 cagtctgcagagaactttcgtcctgattcacgttaatcttatggcttctctgaatctact 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 cagtctgcagagaactttcgtcctgattcacgttaatcttatggcttctctgaatctact 582
Query: 538 cacatgagttcatgtccttcatgatctcactgcattacgtcatattcatggctttacata 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 cacatgagttcatgtccttcatgatctcactgcattacgtcatattcatggctttacata 522
Query: 598 cattccatatgctttactcatgaagtcttatcctggaatatgacattcatttgacttgtt 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 cattccatatgctttactcatgaagtcttatcctggaatatgacattcatttgacttgtt 462
Query: 658 gtgt 661
||||
Sbjct: 461 gtgt 458
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no203_n11.g1 MSMg01no203_n11.g1 CHROMAT_FILE:
MSMg01no203_n11.g1 PHD_FILE: MSMg01no203_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:09 2005
(603 letters)
>mm_chr9_10670142_10671145
Length = 1004
Score = 1075 bits (556), Expect = 0.0
Identities = 592/604 (98%), Gaps = 1/604 (0%)
Strand = Plus / Plus
Query: 1 caggtcccagggaggatgcttgtatgttatgaaaatgataaattaagacccaaa-tatcc 59
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 201 caggtcccagggaggatgcttgtatgttatgaaaatgataaattaagacagaaaatatcc 260
Query: 60 ctgctagtgagcttctgatctagatatattaactttttctaacatcaagaaaatatgtct 119
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 ctgctagtgagcttctgatctagatatattaactctttctaacatcaagaaaatatgtct 320
Query: 120 tattattaccaccttattttaaacaataatgtttgaataaaatttgttttaataagggct 179
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattattaccaccttattttaagcaataatgtttgaataaaatttgttttaataagggct 380
Query: 180 ttaaagagaatgtagttttcatgctaagtgtgagacttgacaggcacagagacttgtatt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaaagagaatgtagttttcatgctaagtgtgagacttgacaggcacagagacttgtatt 440
Query: 240 cttataatcattttcagataatgaaacttagtaatagcatcactctaatcaaagccagag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 cttataatcattttcagataatgaaacttagtaatagcatcactctaatcaaaaccagag 500
Query: 300 tcacattaaagctttagctataaccctcggtgattatacagcccgacaaatgcctgccaa 359
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 tcacattaaagctctagctataaccctcggtgattatacagcttgacaaatgcctgccaa 560
Query: 360 gtaaattatgtatcttgaaattgacatgcaaaagctagagatgccacctcatcagaaagc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaaattatgtatcttgaaattgacatgcaaaagctagagatgccacctcatcagaaagc 620
Query: 420 tcaagatggaatcaagtgcagggatagcagcctgatctaaagaacttgctggaaagggat 479
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcaagatggaatcaagtgcaggggtagcagcctgatctaaagaacttgctggaaagggat 680
Query: 480 taaatcaatgcattctttccacagatgcacatcatgatgaaatgacactattttcaaacc 539
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taaatcactgcattctttccacagatgcacatcatgatgaaatgacactattttcaaacc 740
Query: 540 cacaatagcatttacacattcaagaaaaattcttgcagaaatgttgacagagttgactgt 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 741 cacaatagcatttacacattcaagaaaaattcttgcagaaatgttgacagagttgagtgt 800
Query: 600 ctaa 603
||||
Sbjct: 801 ctaa 804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1004
Length adjustment: 10
Effective length of query: 593
Effective length of database: 994
Effective search space: 589442
Effective search space used: 589442
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
