BAC Information

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BAC

Clone NameMSMg01-203O17
Chromosome9 (Build37)
Map Location 8,432,652 - 8,432,956
singlet/doubletsinglet
Overlap genenone
Upstream geneMmp3, Mmp1a, Mmp10, Mmp8, Mmp27, Mmp20, Mmp7, LOC665057, LOC100039782, Tmem123, Birc2, Birc3, Yap1, EG665090, 9230110C19Rik, AK129341, LOC100039855, 1700018P22Rik, LOC665108, 1700128F08Rik
Downstream geneTrpc6, Pgr, 9030420J04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203O17.T7 (MSMg01no203_o17.b1)MSMg01-203O17.TJ (MSMg01no203_o17.g1)
ACCAG388497AG388498
length756773
length of high quality
(start - end)
373 (46 - 418)305 (77 - 381)
definitionCHROMAT_FILE: MSMg01no203_o17.b1 PHD_FILE: MSMg01no203_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:15 2005CHROMAT_FILE: MSMg01no203_o17.g1 PHD_FILE: MSMg01no203_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAATTGAGGATTCCCAACTGAGAAGCACCTGAAAAACTTTCCAC
ATCCTTAACTATCAGGGAAATGCAATTCACAACAACCCTGAGATCCCACC
TCACACCAGTCAGAATGGTTAAGTGCAGAAATTCAGGTGACAGCAGATAC
TAGCAAAGATGTGGAGAAAAAGGAACACTCATCCATTACTGGTGGGATTG
TACAACCACTCTGGAAATCAGTCTGGCTATTTATCAGAAAATTGGACATA
GTACTAATGCATTATCCAGCAATTCCTCTCCTGGGCATATACCCAGAAGA
TTTTCCAACTTGTAATAAGGACACATGGTCTACTATGTTCATAGCAACCT
TTTTTTTATAGTAGGCAGAATCTCCAAAGTACCCAGATGTCCCTCAACAG
AGGAATGGATACATAAAATGTGGTGCATTTTTACAATGTAGTACTACTCA
GCAATTAAAAACAATGAATTTATGAAATTCTTAGGCAAATGGATGGATCA
GGAGGATATCATTCTGAGAGAGGTATCCCAGTCATAAAAGATGATATGAT
ATGCACTCTCACATGATATGCACTCACTGATACGTGGATATTTGCCCAGA
AACTTAGAATACTCAAGATAAATTTTGCACAACACATGAAACTCAAGAAG
AAGGCCGTGTGGATACTTTGTTCCTTCTTGGAATAGGGAACAAAATACCC
AGGATA
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGATTAAGGAAGAGCTATGACTT
GTCTTAGATCACACAGGACTAAGAGTGGGCCTGAGACCTTCTGCCATGCT
ACTTCATGCAGGTGAACCACACCCAGGCCCCACCAGAGCAACAGGACTAT
TTAAGCAGGTCTGGGATGTAAGGCTGTCCTCTGAGGAACCTTGTGAGAGG
GTTTTTTACAAGGATCTGCACATCAGCCAGACCCTCACTAGCATCCTTAA
GGACATCTGAGCTTAATGCCACAGAGTCGAATATACAATGAAGTAGATCT
AAAAGGGATCAGTAAAGAGAAGGTATCTTACCCAGCTCTCTACTGTTGTA
ATAAAGACCATGACCCAAATCACCCCGCGCATAAAAGAACTTATTTGTGG
TTATAGTTCCATATCATAGTCCTTCACTGAGGGACTGAGTCAAGGCAGAA
ACCCAAGGCAGGAGCTGATGCACAGGCCAGGTGGAGAGTTGCTAACAGGC
TCGCTTAGTTTGCTTTCTTCTTATACCCATGAGCAGCAGCCCAGGGGCTG
ATTACCACAGTCCGTGCACACTCCCAGGGCCTGCTACTGCCCATACCACC
CCATCATAACGTATCCCAGTCCCTACCCACAGCACGCACTATCTGGATTG
TGCTTTTCACCCTGATTCCTTTATCCTCCACAATGGCTTCTATTAATCTC
CCATCGCTCACCCCACTATCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_o17.g1 MSMg01no203_o17.g1 CHROMAT_FILE:
MSMg01no203_o17.g1 PHD_FILE: MSMg01no203_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:15 2005
         (305 letters)



>mm_chr9_8432452_8433157
          Length = 706

 Score =  567 bits (293), Expect = e-166
 Identities = 302/305 (99%), Gaps = 1/305 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggattaaggaagagctatgacttgtcttagatcacacaggactaagagtgggcctgaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 505 tggattaaggaagagctatgacttgtcttagatcacacaggactaagagtggggctgaga 446

                                                                       
Query: 61  ccttctgccatgctacttcatgcaggtgaaccacacccaggccccaccagagcaacagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccttctgccatgctacttcatgcaggtgaaccacacccaggccccaccagagcaacagga 386

                                                                       
Query: 121 ctatttaagcaggtctgggatgtaaggctgtcctctgaggaaccttgtgagaggg-tttt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 385 ctatttaagcaggtctgggatgtaaggctgtcctctgaggaaccttgtgagagggttttt 326

                                                                       
Query: 180 ttacaaggatctgcacatcagccagaccctcactagcatccttaaggacatctgagctta 239
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttacaacgatctgcacatcagccagaccctcactagcatccttaaggacatctgagctta 266

                                                                       
Query: 240 atgccacagagtcgaatatacaatgaagtagatctaaaagggatcagtaaagagaaggta 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgccacagagtcgaatatacaatgaagtagatctaaaagggatcagtaaagagaaggta 206

                
Query: 300 tctta 304
           |||||
Sbjct: 205 tctta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 706
Length adjustment: 9
Effective length of query: 296
Effective length of database: 697
Effective search space:   206312
Effective search space used:   206312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)