Query= MSMg01no204_a06.b1 MSMg01no204_a06.b1 CHROMAT_FILE:
MSMg01no204_a06.b1 PHD_FILE: MSMg01no204_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:24 2005
(626 letters)
>mm_chr9_15079192_15080218
Length = 1027
Score = 1168 bits (604), Expect = 0.0
Identities = 619/624 (99%), Gaps = 1/624 (0%)
Strand = Plus / Plus
Query: 4 ggaattccaggtcaaggagacatagaaataaaaccaaacaacgtaacattttgtgagcat 63
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaggtcaaggagaaatagaaataaaaccaaacaacgtaacattttgtgagcat 263
Query: 64 ggtgacacacacctgcacctgtcctaaagacatccctctgacctgtcctctacagaccac 123
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggtgacagacacctgcacctgtcctaaagacatccctctgacctgtcctctacagaccac 323
Query: 124 atactattctctccgagttttgataaaatgaattcggcatcagaaagacaaac-aacagt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 324 atactattctctccgagttttgataaaatgaattcggcatcagaaagacaaaccaacagt 383
Query: 183 gctcacagtactattttttcagccagctcctctggtttgatgtgcagcacctctatgcag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gctcacagtactattttttcagccagctcctctggtttgatgtgcagcacctctatgcag 443
Query: 243 gtcagaaatctaaggaacggttacattagtggatggttaagtgtaatgcctatctaacaa 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtcagaaatctaaggaacggttacattagtggatggttaagtgtaatgcctatctaacaa 503
Query: 303 aacacattcaggatcttcttgcaattaaagagtgcaactaaactcttccataatctcaaa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aacacattcaggatcttcttgcaattaaagagtgcaactaaactcttccataatctcaaa 563
Query: 363 ggatcaacccaaacaacaattaagcacttgcccataattatctgggggaaagaagttaca 422
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 564 ggatcaacccaaagaacaattaagcacttgcccttaattatctgggggaaagaagttaca 623
Query: 423 atgtctaaaaccagaaagcaccaatttatcttgtagtgggactcatatcagtgctgggac 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atgtctaaaaccagaaagcaccaatttatcttgtagtgggactcatatcagtgctgggac 683
Query: 483 actgaccccagattgtgttttagtaacagcctgacaaggaatcttcaacatatctattac 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 actgaccccagattgtgttttagtaacagcctgacaaggaatcttcaacatatctattac 743
Query: 543 tgttcttaagcatcccagcaggacagctcggccatctcccactgtactccaaaccttaaa 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tgttcttaagcatcccagcaggacagctcggccatctcccactgtactccaaaccttaaa 803
Query: 603 caagctgcctttcaactttctctt 626
||||||||||||||||||||||||
Sbjct: 804 caagctgcctttcaactttctctt 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1027
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1017
Effective search space: 626472
Effective search space used: 626472
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no204_a06.g1 MSMg01no204_a06.g1 CHROMAT_FILE:
MSMg01no204_a06.g1 PHD_FILE: MSMg01no204_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:24 2005
(341 letters)
>mm_chr9_15228923_15229663
Length = 741
Score = 476 bits (246), Expect = e-138
Identities = 319/386 (82%), Gaps = 65/386 (16%)
Strand = Plus / Minus
Query: 1 aatataattctgagatatggaccatcaggaagcctctgtcttgagcattgaggatggttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aatataattctgagatatggaccatcaggaagcctctgtcttgagcattgaggatggttt 327
Query: 61 ttccagcaaaatcaaaacttacactataaacttataaactactgtaagatgtatacacag 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 326 ttccagcaaaatcaaaacttacactataaacttataaactactgtaaggtgtatacacag 267
Query: 121 ataaattcttataaattaaaaaaacaaaaacaaaaacagattctagatggtgggtagggt 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 266 ataaattcttataaattaaaaaaccaaaaacaaaaacagattctagatggtgggtagggt 207
Query: 181 gatccg------------------------------------------------------ 186
||||||
Sbjct: 206 gatccgaggggcttctgcgtgtatttgagctgtgacttggtcattccctctgcagagagg 147
Query: 187 -----------tagcaagtcagatgcagggcatccaacagctgctgcaggcagagaagct 235
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ccacacagagatagcaagtcagatgcagggcatccaacagctgctgcaggcagagaagct 87
Query: 236 ggtggctgagatgtccgaggcccgcaagcaaaagcacggaggctgaagcaggccgaagca 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 ggtggctgagatgtccgaggcccgcaagcaaaagcacggaggctgaagcaggccgaagca 27
Query: 296 gcagctcaggctgaggttgaacagtg 321
||||||||||||||||||||||||||
Sbjct: 26 gcagctcaggctgaggttgaacagtg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space: 243024
Effective search space used: 243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
