Query= MSMg01no205_h20.b1 MSMg01no205_h20.b1 CHROMAT_FILE:
MSMg01no205_h20.b1 PHD_FILE: MSMg01no205_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:22 2005
(239 letters)
>mm_chr9_6181539_6182182
Length = 644
Score = 418 bits (216), Expect = e-121
Identities = 235/244 (96%), Gaps = 5/244 (2%)
Strand = Plus / Minus
Query: 1 aaaaggaggcattactgtttaaaatactgtagctgaccaatgcagtcactgaggagtttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaaaggaggcattactgtttaaaatactgtagctgaccaatgcagtcactgaggagtttt 385
Query: 61 ctcaaaagccatcatgatctgtctgccatagaat-----tatgcattggataaataaaag 115
|||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||
Sbjct: 384 ctcaaaagccatcatgatgtgtctgccacagaattgaactatgcattggataaataaaag 325
Query: 116 aattttaaaacaaaaaacaaaatatttcactttattttttactgaattaaagacttaccc 175
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 324 aattttaaaacaaaaaacaaaatatttcactttattttttacagaattaaagacttaccc 265
Query: 176 tacgtaccattgggatcattcattgtaagttttgggtaattaagcaagcaagcaaacaaa 235
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taagtaccattgggatcattcattgtaagttttgggtaattaagcaagcaagcaaacaaa 205
Query: 236 caaa 239
||||
Sbjct: 204 caaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 644
Length adjustment: 9
Effective length of query: 230
Effective length of database: 635
Effective search space: 146050
Effective search space used: 146050
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no205_h20.g1 MSMg01no205_h20.g1 CHROMAT_FILE:
MSMg01no205_h20.g1 PHD_FILE: MSMg01no205_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:22 2005
(342 letters)
>mm_chr9_6110983_6111725
Length = 743
Score = 636 bits (329), Expect = 0.0
Identities = 338/341 (99%), Gaps = 1/341 (0%)
Strand = Plus / Plus
Query: 1 acagagaatttcacacagaacaagcatttcaagtggaaataagattcaatgtgaaccagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagagaatttcacacagaacaagcatttcaagtggaaataagattcaatgtgaaccagg 260
Query: 61 aatgtaagagcaggattgagcacttcagcaagaaggggtttgtagacagagtttcaggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgtaagagcaggattgagcacttcagcaagaaggggtttgtagacagagtttcaggat 320
Query: 121 taagaaaaagcatagtgtttttttaggggg-aaaaaaaagcaggtgatggaaatgaagga 179
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 taagaaaaagcatagtgtttttttagggggaaaaaaaaagcaggtgatggaaatgaagga 380
Query: 180 acttaaaatgagactttgtgaatgacttttttgtagtatcagacggatggaccagttggt 239
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 acttaaaatgagactttgtgaatgacttttttgtagtatcagagggatggaccagttggt 440
Query: 240 aaagtgttagctttgcaagcatgagaacctgaacttgatcccaagaacccatttctaaaa 299
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagtgttagctttgcaagcatgggaacctgaacttgatcccaagaacccatttctaaaa 500
Query: 300 gcacaacacagtggtatgtgctgggaacactagtgctgata 340
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcacaacacagtggtatgtgctgggaacactagtgctgata 541
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 743
Length adjustment: 9
Effective length of query: 333
Effective length of database: 734
Effective search space: 244422
Effective search space used: 244422
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
