BAC Information

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BAC

Clone NameMSMg01-206I02
Chromosome9 (Build37)
Map Location 7,353,292 - 7,353,735
singlet/doubletsinglet
Overlap geneMmp12
Upstream genePdgfd, EG664919, LOC100039400, LOC100039418, EG547034, Dync2h1, LOC100039658, Dcun1d5, Mmp13
Downstream geneMmp1b, Mmp3, Mmp1a, Mmp10, Mmp8, Mmp27, Mmp20, Mmp7, LOC665057, LOC100039782, Tmem123, Birc2, Birc3, Yap1, EG665090, 9230110C19Rik, AK129341, LOC100039855, 1700018P22Rik, LOC665108, 1700128F08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206I02.T7 (MSMg01no206_i02.b1)MSMg01-206I02.TJ (MSMg01no206_i02.g1)
ACCAG390092AG390093
length707711
length of high quality
(start - end)
444 (106 - 549)244 (107 - 350)
definitionCHROMAT_FILE: MSMg01no206_i02.b1 PHD_FILE: MSMg01no206_i02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:42 2005CHROMAT_FILE: MSMg01no206_i02.g1 PHD_FILE: MSMg01no206_i02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTACCTATTCCGAGAGGATCCGCGGAATTCCCTAATATACTCCTACTACA
AATTGATTTTTTTTCCAGACTAGATTTCTAGTCAACATAATTTTGGCCCA
CAAAATTTTCTACTTCAAAAGTCTAAGATCTCTCCAAACCTTGAGAATCA
AGTTGAAGTTCCTGCCATATGGATTTGATGTACATCAGTTCAAGTATCTT
CAGACAAACGGACAACCAAACAACTTTAAGCACACAGCCATAACATTGGT
TAGATATGAAAACAATCTTACCAGTCTTTAAAGAAAAAGATTTTCTCTCC
CACTGTTGTGACAGCATCAAAACTCAAGCTTTGGTGACAGAAAGTTGATG
GTGGACTGCTAGGTTTTGTCAAGGATGGGGGTTTCACTGGCGCTCCTGAA
AATACATTTTGATGTTCATTTGGGGGAATTTTGTAAGAGGAAGGGCTATT
CATCTTAAATATTTTCTCTTAATGGAAAATAAAAAATAGTCCTGTTTCCT
ATGAAATTCAGGAGAAGCGTTCCTGGAGGACATTATCATACTCAGTTGCA
AAATCACAGAAGGGAATATTTAAATTTTCTTTCTCTGCATGCCCTCTCCC
CCTCAACCAAGCAGTAGTGCCACTGTTAAAAATCACTTTAAATGTGAGAC
TAAATGAATATGGTTCTGTGACACTTAACTTCCAGCGTGCATGCACTTAG
GCCTCAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXGCACTAAACCCATCTGGTCTTGGGCTTCTGTTGATTGGGATA
TTTCCAATAACTGCTGCTATTTCTTTAGCAGTTTTGAGACTTTAGATGGT
TTATCTGAACCTGATTTAACTTTGGTACCTAGTATCTGTGTAGAAAATCA
TCCATTTCATCCAGATTTTCCAATTTTGTTGAGTATAAGCTTTTGTAGTA
GGGTCTGATGATTTTTTGAATTTCCTTGGTTTCTGTTGTCATGTCTCCCT
TTTCAGTTCTGATTTTATTAATTTGGATTCTGTCACTATGCCCTCTGGTT
AGCCTGGCTAAGGGTTTATCTATCTTGTTGATTTTCTCAAAGAACCACCT
CCTGGTTTTGTTGATTCTTTGTATAGCTCTTTTTGTTTCTACTTGGTTGA
TTTCAGCCCTGAGTTTGATTGTTTCCTGCTGTCTACTCCTCTTGGGTGTA
TTCGCTTCTTTTTGCTATAGAGCTTTCAGGTGTGTTGTCAAGCTGCTAGA
GTATGCTCTCTCCAGTCTCTTTTTGTAGGCACTTAGAGCTCAGTTTTTCT
CTTAGCACTGCTTTCATCGTGTTGTATAAGTTTGCATATGTTGTGCCTTC
TTTTTCCTTACATTCTAACAAGTCTTTAATTTCTTTATTTCTTCCCTGAC
CATGTTTCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_i02.b1 MSMg01no206_i02.b1 CHROMAT_FILE:
MSMg01no206_i02.b1 PHD_FILE: MSMg01no206_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:42 2005
         (444 letters)



>mm_chr9_7353092_7353935
          Length = 844

 Score =  843 bits (436), Expect = 0.0
 Identities = 442/444 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttctacttcaaaagtctaagatctctccaaaccttgagaatcaagttgaagttcctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 ttttctacttcaaaagtctaagatctctccaaaccttgagaatcaagttgaagttcctgc 585

                                                                       
Query: 61  catatggatttgatgtacatcagttcaagtatcttcagacaaacggacaaccaaacaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 catatggatttgatgtacatcagttcaagtatcttcagacaaacggacaaccaaacaact 525

                                                                       
Query: 121 ttaagcacacagccataacattggttagatatgaaaacaatcttaccagtctttaaagaa 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ttaaccacacagccataacattggttagatatgaaaacaatcttaccagtctttaaagaa 465

                                                                       
Query: 181 aaagattttctctcccactgttgtgacagcatcaaaactcaagctttggtgacagaaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 aaagattttctctcccactgttgtgacagcatcaaaactcaagctttggtgacagaaagt 405

                                                                       
Query: 241 tgatggtggactgctaggttttgtcaaggatgggggtttcactggcgctcctgaaaatac 300
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 404 tgatggtggactgctaggttttgtcaaggatgggggtttcactggggctcctgaaaatac 345

                                                                       
Query: 301 attttgatgttcatttgggggaattttgtaagaggaagggctattcatcttaaatatttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 attttgatgttcatttgggggaattttgtaagaggaagggctattcatcttaaatatttt 285

                                                                       
Query: 361 ctcttaatggaaaataaaaaatagtcctgtttcctatgaaattcaggagaagcgttcctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ctcttaatggaaaataaaaaatagtcctgtttcctatgaaattcaggagaagcgttcctg 225

                                   
Query: 421 gaggacattatcatactcagttgc 444
           ||||||||||||||||||||||||
Sbjct: 224 gaggacattatcatactcagttgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)