MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-206J02
Chromosome	9 (Build37)
Map Location	96,689,542 - 96,797,945
singlet/doublet	doublet
Overlap gene	LOC100040230, LOC667216, Acpl2, LOC19034
Upstream gene	AI427122, 1700065D16Rik, Xrn1, Gk5, Tfdp2, 1110029I05Rik, Atp1b3, BC043934, Rnf7, LOC667174, Rasa2, Zbtb38, EG622512
Downstream gene	LOC667226, Spsb4, LOC100040254, Slc25a36, EG622727, LOC384971, Trim42, Clstn2
Link	Open Mouse BAC browser

Click to get alignment info.

name	AI427122 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:102502 MGI:2143039
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700065D16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73410 MGI:1920660
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Xrn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:24127 MGI:891964
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gk5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:235533 MGI:2443336
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tfdp2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:211586 MGI:107167
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1110029I05Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319491 MGI:2442132
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 38 ESTs

name	Atp1b3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11933 MGI:107788
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC043934 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:270185 MGI:2679715
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rnf7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19823 MGI:1337096
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667174 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667174
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Rasa2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:114713 MGI:2149960
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zbtb38 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:245007 MGI:2442866
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG622512 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:622512 MGI:3643500
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	LOC100040230 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040230
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC667216 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667216
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 299 ESTs, 6 Proteins pseudo : _no_value

name	Acpl2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:235534 MGI:2442444
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC19034 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:19034
definition	note : peptidylprolyl isomerase A-like pseudogene pseudo : _no_value

name	LOC667226 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667226
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 16 mRNAs, 585 ESTs, 20 Proteins pseudo : _no_value

name	Spsb4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:211949 MGI:2183445
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040254 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040254
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 ESTs

name	Slc25a36 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:192287 MGI:1924909
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG622727 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:622727 MGI:3647131
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 18 mRNAs, 1549 ESTs, 13 Proteins

name	LOC384971 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:384971
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 Proteins pseudo : _no_value

name	Trim42 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78911 MGI:1926161
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Clstn2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:64085 MGI:1929897
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	AI427122 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803101 GeneID:102502 MGI:2143039
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence AI427122 transcript_id : NM_001033210.2

name	1700065D16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328315 GeneID:73410 MGI:1920660
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700065D16 gene transcript_id : NM_028533.2

name	Xrn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:115495454 GeneID:24127 MGI:891964
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : 5'-3' exoribonuclease 1 transcript_id : NM_011916.2

name	Gk5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142343959 GeneID:235533 MGI:2443336
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glycerol kinase 5 (putative) transcript_id : NM_177352.3

name	Tfdp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142369689 GeneID:211586 MGI:107167
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transcription factor Dp 2 transcript_id : NM_178667.3

name	1110029I05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260159 GeneID:319491 MGI:2442132
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 38 ESTs product : RIKEN cDNA 1110029I05 gene transcript_id : XM_001474212.1

name	Atp1b3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803510 GeneID:11933 MGI:107788
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATPase, Na+/K+ transporting, beta 3 polypeptide transcript_id : NM_007502.2

name	BC043934 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142351520 GeneID:270185 MGI:2679715
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC043934 transcript_id : NM_177770.3

name	Rnf7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142369236 GeneID:19823 MGI:1337096
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ring finger protein 7 transcript_id : NM_011279.2

name	Rasa2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114158698 GeneID:114713 MGI:2149960
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAS p21 protein activator 2 transcript_id : NM_053268.2

name	Zbtb38 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117938319 GeneID:245007 MGI:2442866
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger and BTB domain containing 38 transcript_id : NM_175537.3

name	EG622512 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94386330 GeneID:622512 MGI:3643500
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : predicted gene, EG622512 transcript_id : XM_897144.2

name	Acpl2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130104 GeneID:235534 MGI:2442444
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : acid phosphatase-like 2 transcript_id : NM_153420.2

name	Spsb4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892681 GeneID:211949 MGI:2183445
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : splA/ryanodine receptor domain and SOCS box containing 4 transcript_id : NM_145134.3

name	LOC100040254 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260161 GeneID:100040254
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 ESTs product : hypothetical protein LOC100040254 transcript_id : XM_001474361.1

name	Slc25a36 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142361146 GeneID:192287 MGI:1924909
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 25, member 36 transcript_id : NM_138756.3

name	EG622727 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260172 GeneID:622727 MGI:3647131
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 mRNAs, 1399 ESTs, 13 Proteins product : predicted gene, EG622727, transcript variant 2 transcript_id : XM_906238.3

name	EG622727 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260173 GeneID:622727 MGI:3647131
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 mRNAs, 1399 ESTs, 13 Proteins product : predicted gene, EG622727 transcript_id : XM_001474926.1

name	EG622727 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260171 GeneID:622727 MGI:3647131
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 18 mRNAs, 1547 ESTs, 13 Proteins product : predicted gene, EG622727, transcript variant 1 transcript_id : XM_887179.3

name	Trim42 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116174783 GeneID:78911 MGI:1926161
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tripartite motif-containing 42 transcript_id : NM_030219.2

name	Clstn2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254526 GeneID:64085 MGI:1929897
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calsyntenin 2 transcript_id : NM_022319.2

name	AI427122 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85986577 CCDS:CCDS23412.1 GeneID:102502 MGI:2143039
definition	codon_start : 1 product : hypothetical protein LOC102502 protein_id : NP_001028382.1

name	1700065D16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328316 GeneID:73410 MGI:1920660
definition	codon_start : 1 product : hypothetical protein LOC73410 protein_id : NP_082809.2

name	Xrn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:115495455 GeneID:24127 MGI:891964
definition	GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0004527 - exonuclease activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004518 - nuclease activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 product : 5'-3' exoribonuclease 1 protein_id : NP_036046.2

name	Gk5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28893497 GeneID:235533 MGI:2443336
definition	GO_function : GO:0004370 - glycerol kinase activity [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0006072 - glycerol-3-phosphate metabolism [Evidence IEA] codon_start : 1 product : glycerol kinase 5 (putative) protein_id : NP_796326.1

name	Tfdp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30520037 CCDS:CCDS23413.1 GeneID:211586 MGI:107167
definition	GO_component : GO:0005635 - nuclear envelope [Evidence TAS]; GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IC] [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] [Evidence IDA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0000074 - regulation of progression through cell cycle [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA] [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : E2F dimerization partner 2 product : transcription factor Dp-2 protein_id : NP_848782.1

name	1110029I05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149260160 GeneID:319491 MGI:2442132
definition	codon_start : 1 product : hypothetical protein LOC319491 protein_id : XP_001474262.1

name	Atp1b3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680744 CCDS:CCDS23414.1 GeneID:11933 MGI:107788
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0030955 - potassium ion binding [Evidence IEA]; GO:0031402 - sodium ion binding [Evidence IEA]; GO:0005391 - sodium:potassium-exchanging ATPase activity [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006813 - potassium ion transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : ATPase, Na+/K+ beta 3 polypeptide; Na K-ATPase beta-3 subunit product : Na+/K+ -ATPase beta 3 subunit protein_id : NP_031528.1

name	BC043934 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244278 GeneID:270185 MGI:2679715
definition	codon_start : 1 product : hypothetical protein LOC270185 protein_id : NP_808438.1

name	Rnf7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625597 GeneID:19823 MGI:1337096
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006916 - anti-apoptosis [Evidence IDA]; GO:0008637 - apoptotic mitochondrial changes [Evidence IDA]; GO:0006919 - caspase activation [Evidence IDA]; GO:0008631 - induction of apoptosis by oxidative stress [Evidence IDA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 product : ring finger protein 7 protein_id : NP_035409.1

name	Rasa2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114158699 CCDS:CCDS23416.1 GeneID:114713 MGI:2149960
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005096 - GTPase activator activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0051056 - regulation of small GTPase mediated signal transduction [Evidence IEA] codon_start : 1 product : RAS p21 protein activator 2 protein_id : NP_444498.2

name	Zbtb38 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117938320 GeneID:245007 MGI:2442866
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 note : CtBP-interacting BTB zinc finger protein; Zenon homolog product : zinc finger and BTB domain containing 38 protein_id : NP_780746.2

name	EG622512 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82930630 GeneID:622512 MGI:3643500
definition	codon_start : 1 product : hypothetical protein protein_id : XP_902237.1

name	Acpl2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23510309 CCDS:CCDS23418.1 GeneID:235534 MGI:2442444
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003993 - acid phosphatase activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : acid phosphatase-like 2 protein_id : NP_700469.1

name	Spsb4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21553087 CCDS:CCDS23419.1 GeneID:211949 MGI:2183445
definition	GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA] codon_start : 1 note : SPRY domain-containing SOCS box protein SSB-4 product : SPRY domain-containing SOCS box 4 protein_id : NP_660116.1

name	LOC100040254 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260162 GeneID:100040254
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474411.1

name	Slc25a36 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20270293 CCDS:CCDS23420.1 GeneID:192287 MGI:1924909
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] codon_start : 1 product : solute carrier family 25, member 36 protein_id : NP_620095.1

name	EG622727 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149260174 GeneID:622727 MGI:3647131
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474976.1

name	EG622727 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82930638 GeneID:622727 MGI:3647131
definition	codon_start : 1 product : hypothetical protein isoform 1 protein_id : XP_892272.1

name	EG622727 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82930827 GeneID:622727 MGI:3647131
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_911331.1

name	Trim42 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116174784 CCDS:CCDS23422.1 GeneID:78911 MGI:1926161
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : tripartite motif-containing 42 protein_id : NP_084495.2

name	Clstn2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254527 GeneID:64085 MGI:1929897
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0045211 - postsynaptic membrane [Evidence IDA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0007156 - homophilic cell adhesion [Evidence IEA] codon_start : 1 note : calsyntenin-2 product : calsyntenin 2 protein_id : NP_071714.2

name	LOC667174 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667174
definition	number : 1 pseudo : _no_value

name	LOC667174 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667174
definition	number : 2 pseudo : _no_value

name	LOC100040230 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040230
definition	number : 1 pseudo : _no_value

name	LOC100040230 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040230
definition	number : 2 pseudo : _no_value

name	LOC384971 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:384971
definition	number : 2 pseudo : _no_value

name	LOC384971 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:384971
definition	number : 1 pseudo : _no_value

name	LOC667216 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149260169 GeneID:667216
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 299 ESTs, 6 Proteins product : similar to hCG2016250 pseudo : _no_value transcript_id : XR_031882.1

name	LOC667226 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149260170 GeneID:667226
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 16 mRNAs, 585 ESTs, 20 Proteins product : similar to H3 histone, family 3B pseudo : _no_value transcript_id : XR_031950.1

clone name	MSMg01-366D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-137K19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-143P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-302B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325J08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-415A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-463J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-095A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-185M05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-302G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-326M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-508G03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-120B16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-354M16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-392D23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450E08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-528G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-179A11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-198P20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-085B05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-051E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-413A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-491C14
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-142B13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-417A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-335E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-148O07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-431C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303D14
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-303E08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-303E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-303E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-372K03
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-167F08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057O21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-370D05
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-264C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379L24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-060D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-101D20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-073D11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-474O24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-206J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-161H10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-100I05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-403M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-434C13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-369L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-543G03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-075F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-177F18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-289I11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-085M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381C14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-055P12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-090D24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-090E24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108B16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-177C12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279L24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-391E02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108G07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367H14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-054C10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-345P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-060J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-342B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-058I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-311N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-166D01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-488O20
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-147M06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108M21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-457K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089O06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-028F03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-064B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223I02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-209J11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214C22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101J12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-098P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076L07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-325E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101B08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-186E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151J14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214H15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-222L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311K08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-050B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226G17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199C09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-180P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-130H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150G05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-033B11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-211C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332E07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251I02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-225K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001M10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029P07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-038A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-082P19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101B03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124P07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129H05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-168C05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-141D20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-033M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-267M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322I04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-289O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208G14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-326M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-341K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068B16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256D19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-032F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126H18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-102J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101G20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-224K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200K19
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-206J02.T7 (MSMg01no206_j02.b1)	MSMg01-206J02.TJ (MSMg01no206_j02.g1)
ACC	AG390135	AG390136
length	761	772
length of high quality (start - end)	170 (140 - 309)	102 (153 - 254)
definition	CHROMAT_FILE: MSMg01no206_j02.b1 PHD_FILE: MSMg01no206_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:47 2005	CHROMAT_FILE: MSMg01no206_j02.g1 PHD_FILE: MSMg01no206_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:47 2005
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(96,797,776 - 96,797,945)	(96,689,542 - 96,689,643)
sequence	ACCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATA CGCGGAATTCCATGGTCNCTCCCTAAAAAAAGGGAGTCTGTATGTCTTAC CACCAGTTGTAAATAGAAAATGCTGTGTATCGCCAACAGGATCCTGTTTC AATTTCTCCTCTGCTCATAGATAAAGGCAGGGGTTAGAAAAGGAACCCAG GAAAGAAGCAAAAGGAGTGCAGGTGTGCCTAACACTCGTAGGTGGCGCTG TTGCTCTGGGAACATATTGATACAACAGGGAAGTGACCTTAATGTCAATT TGTCCCATCCAAACAGGGCATGGGCTGAGAACACACAAATCTGTGACCTT CTATGCTGGCTAGAACTTATTATTCTTATAACACCACTTGTTAAAAAAAG TTAACCCTGACTTAAAACTTTGGCCCCCCCGTGTCTTAATTAGGTTGTCC ATTGCTATGAATAGACACCATGACCAAGGCAAGTCTTATGAAGACAAACA TTTAATTAGGGCTGGCTTACTATTGCAGAGGTTCAGTCCATTATCATCAT GGCAGGAAGCATGCCTTTCTTGTCATACAGAAATGTCTCCAGAGGAGATG ATAGTTCTACATCTTGAAACTGAACGGCAGTCTGAATACTAATTTCTTTT GCACTGGTCCTTGTTGCTTGTTTGGGAAGCTTTGAATAATAAAGAACCAC TTCAAAGTCTATTTCACACAGGCGCACCCCCCCTCCTCTCCACTTACATT CATCCCTCCCC	CTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXAACAGGTTGGATTATTATGGTTTAGAGA TAGTTTGTTGGGGAGAGTAATTTTCTCCTTATAAATAAAAACAGGGAAAA GATCATTTAACCCCGATAAACAGGTATAGAATAGATAACTACTTAGAAGA GCTAAGGGGAAGAGTTATTACTGTGGATTAGCCAGCTATCTGTTGCTATG ACAAAATAACCTACAGAAATCAACTTTCAGGAGAAAAGGAGAGTATCTGG CTCGTGATCTCCGAGGTTTGGGTCCGTGGTTATTTGTCTCCATTGTTTTA GGGCCTGTCTGGAAGATATTTTTATGTACGACAATCTGTCAGAGTAGGGT TACTCATCTCGTGTTGGTCACCCCCTATAATGAAAAATATAAGCTGCCTG AGTCCTACTATTTGTTTACGGCATGCCCCTTGATAGATAGCTTCTTTCCT CTAGACTTCTTTTTCCTTTTAACAGCTCCTTTGGTTGAAGTTTTCCATTT TCTATTTACAGCAGATTTTGTGGTCCCGTCTTAGAATTTTATTTTTATTT TTTCCTTTTGGTTTTTGTCAACTGGTTATGGTGTTTGGTTCTCTCTTTCC CCCCTTGGTTGCGTTCGTCCTTCTTTTTTTGGTTCTTTGACATGGTAGTA TAGAATTTCCCTCGGTTTTCATCGGCCCCTACGGTTTTGTGTCCTCCGCG CCCCGTGCTCTCCTTATTTTCG
quality values	Open. Hide. 8 8 8 8 10 10 10 9 15 15 17 18 18 31 37 31 31 31 31 30 33 41 32 32 28 37 32 33 41 41 30 20 20 10 12 10 23 11 11 8 8 8 6 6 6 7 9 10 10 10 10 22 23 33 26 26 28 28 33 33 33 33 33 21 23 9 3 0 3 7 8 8 7 7 7 8 11 23 31 31 28 28 20 26 24 33 30 30 30 50 48 50 57 48 48 48 57 59 37 37 37 33 33 33 39 39 39 47 59 59 48 47 43 43 43 43 39 37 28 22 17 10 9 9 9 9 9 9 9 9 9 10 12 12 8 8 8 8 10 15 22 30 37 47 57 57 57 47 47 47 42 47 47 43 43 46 46 46 57 57 48 48 48 48 48 48 46 46 37 31 31 24 24 25 36 37 43 37 36 30 25 25 36 36 41 30 23 23 23 24 30 42 33 33 32 28 28 24 28 27 28 28 32 32 32 36 23 30 30 37 27 23 36 31 42 35 33 33 33 33 33 33 33 43 43 43 43 57 52 57 57 52 52 37 43 43 43 27 38 13 12 12 28 28 43 43 43 41 29 33 33 35 33 35 47 44 47 42 27 18 12 15 15 36 36 59 59 26 23 10 10 10 19 19 28 28 23 21 19 20 17 21 21 37 33 33 37 42 42 54 54 32 34 22 22 22 31 31 39 39 42 43 29 29 25 25 23 24 16 16 15 24 21 20 20 23 20 23 28 30 28 31 20 20 15 24 21 11 11 11 12 12 13 15 15 25 25 30 32 39 39 43 36 32 39 39 39 37 37 39 35 35 47 37 37 28 24 18 18 14 14 14 16 19 12 12 14 23 19 8 8 8 8 8 8 10 21 17 10 10 8 8 8 8 11 24 22 28 28 28 28 32 31 19 10 8 8 8 8 11 15 26 28 18 13 13 19 28 34 43 43 46 37 37 30 22 22 22 21 28 19 12 12 11 12 13 15 19 19 15 14 14 15 13 10 10 10 12 8 8 8 8 11 13 14 14 16 16 16 24 16 18 13 13 13 16 18 24 19 19 16 19 13 13 11 14 10 10 10 19 16 18 13 12 10 12 13 11 12 12 11 11 16 19 26 28 33 28 21 12 12 8 13 8 8 9 9 10 12 10 15 12 15 10 16 15 23 15 20 15 20 16 10 10 10 10 10 17 8 8 8 8 8 10 9 9 9 9 9 13 17 17 11 11 11 11 9 9 13 13 19 20 15 12 12 10 12 10 11 10 13 12 13 12 12 12 12 11 13 11 15 11 11 11 11 13 17 13 12 12 12 14 10 8 8 8 8 8 10 9 8 8 8 8 8 8 9 9 10 10 10 9 9 9 11 10 9 10 10 10 13 14 14 14 15 18 17 15 15 13 12 12 16 16 10 10 8 15 10 10 8 10 10 13 10 10 8 8 8 8 6 6 8 8 7 9 9 9 11 13 14 16 10 7 6 6 6 13 10 9 9 9 9 8 8 8 8 10 8 8 8 8 8 8 8 8 9 8 8 9 9 9 9 12 12 11 11 11 10 10 10 10 10 13 12 12 10 8 8 8 8 8 9 19 16 10 8 8 8 8 8 13 16 21 11 9 8 10 8 8 8 10 15 10 10 12 9 8 8 8 8 8 10 8 8 8 8 9 12 12 9 8 8 8 8 8 8 8 8 8 8 8 10 10 9 9 9 8 10 9 8 8 6 6 8 6 8 8 9 12 12	Open. Hide. 8 8 8 8 11 13 12 10 10 10 15 16 29 32 37 25 27 15 15 14 21 27 50 50 50 50 50 50 41 41 34 24 22 9 9 9 8 10 8 8 8 8 8 8 8 8 20 18 26 23 20 19 26 32 44 43 40 40 40 28 23 14 15 9 9 9 10 10 9 9 11 13 13 9 9 9 12 9 12 12 22 25 37 37 37 39 44 41 47 48 48 48 48 43 43 43 43 34 37 34 34 34 33 37 39 39 39 47 39 48 48 48 46 46 41 39 28 23 12 11 10 11 12 11 11 11 12 11 11 11 18 18 34 34 25 23 23 20 15 17 17 24 24 19 24 24 23 19 23 14 19 19 14 21 21 43 43 42 39 32 35 35 42 27 37 26 29 21 19 28 32 35 39 39 46 44 43 39 39 37 37 37 39 39 47 47 47 36 36 28 28 28 27 34 31 33 33 36 29 29 17 17 17 32 32 43 43 47 47 57 47 40 32 28 28 28 33 36 44 28 30 28 36 31 23 23 23 19 21 19 12 12 12 24 15 20 20 32 31 36 36 39 40 33 28 28 34 40 28 25 12 11 11 12 15 15 14 14 14 14 14 15 14 15 15 13 13 11 11 11 19 12 11 11 12 25 28 25 18 18 24 19 19 20 20 28 20 21 24 18 15 13 13 13 10 14 14 17 24 15 16 11 16 10 11 11 19 18 33 33 33 33 28 31 31 25 25 28 32 30 30 30 24 23 18 12 11 10 8 8 8 10 10 16 21 17 17 17 12 15 10 10 10 10 17 18 23 23 23 28 28 28 14 14 14 15 15 18 18 21 30 33 23 15 10 8 8 8 8 9 15 20 11 11 11 12 11 11 10 10 11 8 8 6 6 8 10 11 11 11 11 11 12 13 15 14 14 12 14 11 14 12 12 12 13 12 21 13 10 10 10 8 8 8 8 8 8 8 10 10 10 8 8 8 8 10 12 15 10 8 8 8 10 8 15 12 11 8 8 8 8 8 8 8 8 8 8 9 12 12 10 10 10 10 11 17 9 8 8 8 8 10 11 10 8 8 6 6 8 8 10 12 12 12 12 12 9 9 9 17 10 12 10 12 10 10 10 10 12 10 12 10 10 16 14 16 10 10 9 10 10 10 10 8 10 10 8 7 6 6 8 8 12 10 12 12 19 22 23 12 9 8 8 8 8 8 8 8 8 8 8 8 10 8 10 10 10 8 6 6 8 8 8 8 8 8 9 12 18 15 9 9 9 9 8 10 6 6 8 8 8 8 10 8 8 8 8 8 8 10 8 8 6 6 8 8 8 8 8 8 8 8 8 8 8 10 10 9 9 9 10 9 10 9 8 10 10 10 8 8 10 12 16 12 10 10 10 8 8 8 8 8 8 10 10 12 10 12 12 8 8 8 9 8 8 10 12 13 12 8 8 10 11 12 14 13 11 10 10 10 10 8 8 8 6 6 8 8 10 10 11 8 8 6 6 8 6 10 10 10 10 10 10 12 11 11 10 8 8 8 8 8 8 8 10 10 18 12 12 11 11 11 8 8 6 6 8 8 11 10 10 9 8 8 8 10 10 10 8 8 6 6 6 6 8 8 8 8 8 8 8 8 7 8 7 7 7 6 8 11 8 10 6 8 8 8 8 8 8 8 8 8 8 8 12 13 11 10 10 6 10 6 6 8 8 8 8 8 8 6 6 8 8 8 8 6 6 8 11 8 8 8 8 10 6 6 8 12 20 11 11 11

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no206_j02.b1 MSMg01no206_j02.b1 CHROMAT_FILE:
MSMg01no206_j02.b1 PHD_FILE: MSMg01no206_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:47 2005
         (170 letters)



>mm_chr9_96797576_96798145
          Length = 570

 Score =  321 bits (166), Expect = 1e-92
 Identities = 169/170 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatcctgtttcaatttctcctctgctcatagataaaggcaggggttagaaaaggaaccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gatcctgtttcaatttctcctctgctcatagataaaggcaggggttagaaaaggaaccca 311

                                                                       
Query: 61  ggaaagaagcaaaaggagtgcaggtgtgcctaacactcgtaggtggcgctgttgctctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ggaaagaagcaaaaggagtgcaggtgtgcctaacactcgtaggtggcgctgttgctctgg 251

                                                             
Query: 121 gaacatattgatacaacagggaagtgaccttaatgtcaatttgtcccatc 170
           ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gaacatattgagacaacagggaagtgaccttaatgtcaatttgtcccatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 570
Length adjustment: 8
Effective length of query: 162
Effective length of database: 562
Effective search space:    91044
Effective search space used:    91044
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no206_j02.g1 MSMg01no206_j02.g1 CHROMAT_FILE:
MSMg01no206_j02.g1 PHD_FILE: MSMg01no206_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:47 2005
         (102 letters)



>mm_chr9_96689342_96689843
          Length = 502

 Score =  190 bits (98), Expect = 3e-53
 Identities = 101/102 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatttaaccccgataaacaggtatagaatagataactacttagaagagctaaggggaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatttaaccccgataaacaggtatagaatagataactacttagaagagctaaggggaag 260

                                                     
Query: 61  agttattactgtggattagccagctatctgttgctatgacaa 102
           ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 agttattactgtggattagtcagctatctgttgctatgacaa 302


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 102
Length of database: 502
Length adjustment: 8
Effective length of query: 94
Effective length of database: 494
Effective search space:    46436
Effective search space used:    46436
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information