BAC Information

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BAC

Clone NameMSMg01-207G14
Chromosome9 (Build37)
Map Location 15,603,532 - 15,603,937
singlet/doubletsinglet
Overlap genenone
Upstream geneMre11a, LOC100040259, Gpr83, Folr4, Panx1, Hephl1, 2200002K05Rik, Crsp6, 4931406C07Rik, Josd3, 5830418K08Rik, LOC100040375, LOC100039955, BC017612, Ccdc67, LOC665461, LOC330891, Slc36a4
Downstream geneMtnr1b, Fat3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207G14.T7 (MSMg01no207_g14.b1)MSMg01-207G14.TJ (MSMg01no207_g14.g1)
ACCAG390647AG390648
length1,2841,257
length of high quality
(start - end)
327 (484 - 810)384 (75 - 458)
definitionCHROMAT_FILE: MSMg01no207_g14.b1 PHD_FILE: MSMg01no207_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:30:19 2005CHROMAT_FILE: MSMg01no207_g14.g1 PHD_FILE: MSMg01no207_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:30:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCAAATTTNNNNNNNAAACAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCAACTAAGGAATATCACATGGTTTGAGAAGCACCTA
AAAAAAGTGTTCAACATCCTTACTCATCAGGGAAATGCAAATCAAAACAA
CCCTGAGATTCCACCTCACAAAAGTCAGAATAGTTAAAATCAAAACCTCC
GGTGACAGCAGATGATGCCAAGAAAGAGAAACACGGCCTGAGCATCGGTG
GCAGACATCTTGGTTCTGAGACTCCGCCGAGTCTACTCTGCACAGGTAAG
AGTGTGGACTACAGAAACTAACAGCTTCTGGGACAGGTCCTGTTTTGGGC
CTTCATTTTTGGCCAGGAGGGAGGTCCAAATGCCAGATATCTGTGCACCT
TCCCTGTAAGAAGAGAGCTTGCCTGCAGAGAGTGCTCTGACCACTGAAAC
TCAGAAGAAAGAACTAGTCTTCTTTGTCTGCTGATAGAGGCTAACAGAAT
CACAAGAGGAACAATCTCTAACCAGAGACAACGAAATCAACTAACTCCAG
AGATTACCAGATGGCGAAAGATAAATGTAAGAATCTTACTAACAGATACC
AAGACACTCACCATCATCAGAACCCAGCACTCCCACCTTGCCCAGTCCAG
GGCACTCCCACACACTTGAAAAGCTAGACATGGATTTAAAAGCATATCTC
ATGATGATGGTAGAGGACATCAAGAGGACTTTAATAACTCACTCAAAGAA
ATACAGAAGAACACTGCTAAACAGATAGAAGACCTTAAAGAGGAAGCACA
AAAATCCCTTAAAGAATTGCAGGAAAACATGACCAAACAGGTGATGGAAT
TGAATAAAACATCCAACCCTAAAAAGGGAAGTAGACACAGTAAAGAAAAC
CCAAAGTGAGGCAACACTGGAAATAGAAACCCTAGGAAAGATATCTGGAA
CCTTAGATGTGAGCCTCAGCAACTGATTACCAGAGATGGAAGAGAGAATC
TTCAGGGCAAAAAATTCCATAGAAACATTCGGCCCACAATCAAAGAAAAT
GGAATGGCAAAAGAATCTAAAGCAAATTTTCCAGGAAATCCCGGCCCAAT
GAAAAAACCAAACCTAGGGCTTATAGGGTTTAATTAGAAGTGAAATTTTT
CTCCTCAAGGGGGCACAAAAATTTTCTAAAAAATAATAAAAAAATCTTCT
ACCTCTTTAAAAAGAATTTTTTTAAATTAATAAATCTCTTAATCCTCAAA
ATGTGGATCAAATAAATTTCTTCTCCACCTTAAT
TTTTNGGCTCATTGGAGGCTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACGCCTAGTCACTGCTCATCTCGCGG
TATAGTAATGGGGTAATGGGCGAGCAATGAATCAGGAGCTGTCACGCCAC
ATCAGGTGCTGAAATGTCACGCTGCAGGCTATATAACCAGCGCCATTTTC
CCGGTTCGGGGTCTTCCCACCTGATAAGTAAGCAATAAAAGCTTTGCCGC
AGAAGATTCCGGTTGTCCTGAATGTGTTCTTGCCAGTGGGGACAAAAGCT
TGGGCAATACCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTTTCCTTCCCT
TTTCCTCCCCTTTCTCTTCCTCATCCCCCTCCATCTTGTGTGGGGATGAT
CCTGTGCTGAGCCTACTTAGTGTCCCTGCCACTGCCTTCCTTTCCCACTA
TGATGGTCTTTATCTGACCGCCCCTGGGATCTAAAACAAATCCGCTTAAA
AGCAGTATGAAGCAGCATCTCCCTCTCTCTCACCTCAGCTTTGCCTTGCC
TCCCACCACCCCGGACATCTAGAGGTGGTACTCAGCCTCGGGACTTCTCT
AGCTCAGGACTCTTCTTGGCTTTGCTACCACATCCTCAACCTTGCAAAGG
ACAAGGAAGGCCTGTGATCACCAGGACTCACCCTGTACTGCCTGATACAG
CCAGATTGGCTTCTCAGTGTGAGTGAACACAGCCCAGTAATGACTGAACC
CGAACTCCACTGAGTGTGAGAATACTAGTATTTCTGCCATTGAAAAATTC
CCTTGATCATTTACATAGTCCAAATGAAAAATTATGTTACAGAAAAAAGA
AACAAACATATATTGGCCCTTCTTTAAAAAAAGGAATTCCTTTTTGTTTT
TAATTACATGTACATGTGTTTGGAAGTGTCTTGCCTTTGGGTGTGTGCAC
ATGTGCCACATAGGCGAAGTATAATGTATTAAAACCATTTACCGGTGGTT
GGGACCCACTTGAAAAAGGTGTTGGGAACTGAATCTTTGTCCCTTCTATG
AAAAAAAGGGGCTTCCCACTGTCCAACTTGGGGTTTTTAAAGGAAGACTT
TTTGTTTACTTTTAAATAAGAATTTTTTAAATTTTTGTGGCTCGGGTAAA
TTTTTTCTGTTTTCTTTTAAGAAGGTAATGGTTATAATTTTATTTTCTAT
CCTTGTTTTCACTTTTTATTATATTGTTCATCCTATTATTATTCNCTTGT
TGTACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_g14.g1 MSMg01no207_g14.g1 CHROMAT_FILE:
MSMg01no207_g14.g1 PHD_FILE: MSMg01no207_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:30:19 2005
         (384 letters)



>mm_chr9_15603356_15604139
          Length = 784

 Score =  611 bits (316), Expect = e-179
 Identities = 372/406 (91%), Gaps = 24/406 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   acgcctagtcactgctcatctcgcggtatagtaatggggtaatgggcgagcaatgaatca 60
           ||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||
Sbjct: 177 acgcctagtcactgctcatctcgtggtgtagtaatggggtaatgggtgagcaatgaatca 236

                                                                       
Query: 61  ggagctgtcacgccacatcaggtgctgaaatgtcacgctgcaggctatataaccagcgcc 120
           ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 237 ggagctgtcacgccacatcaggtgctgaaatgtcacgctgcgggctatataagcagcgcc 296

                                                                       
Query: 121 attttcccggttcggggtcttcccacctgataagtaagcaataaaagctttgccgcagaa 180
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 297 attttcccggttcggggtcttccctcctgataagtaagcaataaaagctttgccacagaa 356

                                                                       
Query: 181 gattccggttgtcctgaatgtgttcttgccagtggggacaaaagcttgggcaatacctcc 240
           ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 357 gattccggttgtcctgagtgtgttcttgccagtggggacaaaagctcgggcaatacctcc 416

                                                                       
Query: 241 ctccctccctccctccctccctc------------------------tctttccttccct 276
           |||||||||||||||||||||||                        |||||||||||| 
Sbjct: 417 ctccctccctccctccctccctccctccctccctccctccctccctctctttccttcccc 476

                                                                       
Query: 277 tttcctcccctttctcttcctcatccccctccatcttgtgtggggatgatcctgtgctga 336
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tttcctcccctttctcttcctcatccccctccatcttgtgtggggatgatcctgtgctga 536

                                                         
Query: 337 gcctacttagtgtccctgccactgccttcctttcccactatgatgg 382
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gcctacttagtgtccctgccactgccttcctttcccactatgatgg 582


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)