Query= MSMg01no207_i06.b1 MSMg01no207_i06.b1 CHROMAT_FILE:
MSMg01no207_i06.b1 PHD_FILE: MSMg01no207_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:30:33 2005
(785 letters)
>mm_chr9_28164012_28165196
Length = 1185
Score = 1410 bits (729), Expect = 0.0
Identities = 771/786 (98%), Gaps = 6/786 (0%)
Strand = Plus / Plus
Query: 5 gaattcagttcataagagccaagatggtagtcactgtcaactttctgtttctccttataa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattcagttcataagagccaagatggtagtcactgtcaactttctgtttctccttataa 260
Query: 65 aaccttttctgtagccatgtgtatatgaagatatgaagttaattttctgtaaccatggtt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaccttttctgtagccatgtgtatatgaagatatgaagttaattttctgtaaccatggtt 320
Query: 125 taggccagtagccagcagctgagtgcccagaactgtccactttcctgtctgcacctattg 184
||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 taggccactagccagcagatgagtgcccagaactgtctactttcctgtctgcacctattg 380
Query: 185 cgtgagaccacttgtctcccaggacatcagggtcctttgccacccaagtaccttggctct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgtgagaccacttgtctcccaggacatcagggtcctttgccacccaagtaccttggctct 440
Query: 245 ccccgcttctccagcttcttctccaggccagactattttcagcattttccttgggtatgc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccccgcttctccagcttcttctccaggccagactattttcagcattttccttgggtatgc 500
Query: 305 taattgtaaatatatggcctgtaacttaggtct-ccattagccaagacagcccttctcca 363
||||||||||||||||||||||| |||||| || ||||||||||||||||||||| ||||
Sbjct: 501 taattgtaaatatatggcctgtagcttagg-cttccattagccaagacagcccttttcca 559
Query: 364 ccttcagctaatccaaacaggactctgactttgc-acacaatgctgactgctgtcttttt 422
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 560 ccttcagctaatccaaacaggactctgactttgccacacaatgctgactgctgtcttttt 619
Query: 423 tttct-cagatctatttatttatttacttatttaatgtataagagtacactgtagctgtc 481
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttttttcagatctatttatttatttacttatttaatgtataagagtacactgtagctgtc 679
Query: 482 ctcagacacaccagacgagggcatcagatcctattatggatggttgtgagccaccctgtg 541
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 680 ctcagacacaccagaagagggcatcagatcctattatggatggttgtgagccaccatgtg 739
Query: 542 gttgctggaaattgaactcaagatctctggaagtccagcaagtgtgcttgactactgagt 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gttgctggaaattgaactcaagatctctggaagtccagcaagtgtgcttgactactgagt 799
Query: 602 catctcttcatctctctctct--tgctctctctctttctctctctcccatctctctcaat 659
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 800 catctcttcatctctctctctcttgctctctctctttctctctctcccatctctctcaat 859
Query: 660 ctttcaaatactttttatgaaagtggtcatttcccaatgtggtgtttggnggaaccccaa 719
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 860 ctttcaaatactttttatgaaagtggtcatttcccaatgtggtgtttgggggaaccccaa 919
Query: 720 agattgctcttcccttctgggaaaacatccttttctagaatgttaactcaggtttaggac 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 agattgctcttcccttctgggaaaacatccttttctagaatgttaactcaggtttaggac 979
Query: 780 aggccc 785
||||||
Sbjct: 980 aggccc 985
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 785
Length of database: 1185
Length adjustment: 10
Effective length of query: 775
Effective length of database: 1175
Effective search space: 910625
Effective search space used: 910625
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no207_i06.g1 MSMg01no207_i06.g1 CHROMAT_FILE:
MSMg01no207_i06.g1 PHD_FILE: MSMg01no207_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:30:33 2005
(388 letters)
>mm_chr9_28195564_28196351
Length = 788
Score = 733 bits (379), Expect = 0.0
Identities = 385/387 (99%)
Strand = Plus / Minus
Query: 1 tctcctctcctgtctttgttctttctagttaggctctcaactgactggatgaggcccacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tctcctctcctgtctttgttctttctagttaggctctcaactgactggatgaggcccacc 719
Query: 61 caccaatgaaccctgtttttcaaaagtctgtagacttaaatcttgatattgtatataaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 caccaatgaaccctgtttttcaaaagtctgtagacttaaatcttgatattgtatataaag 659
Query: 121 tatcaacccagaaacaccctgaatgtctgcaccattgccgatccagaatgacacataaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 tatcaacccagaaacaccctgaatgtctgcaccattgccgatccagaatgacacataaaa 599
Query: 181 tcaaggatcacgggtctgcatacagctttgaagcagctgtcctaaaaggattaaaaggag 240
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tcaaggatcgtgggtctgcatacagctttgaagcagctgtcctaaaaggattaaaaggag 539
Query: 241 tgttcctttaagaaggtcatactaagaagcaaagagaagaaaagttaccgtcctctcatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tgttcctttaagaaggtcatactaagaagcaaagagaagaaaagttaccgtcctctcatc 479
Query: 301 ctaatatccccaccacaggcaagctaatgcccaatctaatgcctcaaaagacaaagccac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ctaatatccccaccacaggcaagctaatgcccaatctaatgcctcaaaagacaaagccac 419
Query: 361 ctttagcatttaaagacttcaaattac 387
|||||||||||||||||||||||||||
Sbjct: 418 ctttagcatttaaagacttcaaattac 392
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space: 295241
Effective search space used: 295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
