BAC Information

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BAC

Clone NameMSMg01-209H10
Chromosome9 (Build37)
Map Location 59,499,041 - 59,499,347
singlet/doubletsinglet
Overlap genenone
Upstream geneNptn, 2410076I21Rik, Hcn4, Neo1, LOC100040186, EG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6
Downstream genePkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389, Thsd4, LOC100039792, EG384942, Lrrc49
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209H10.T7 (MSMg01no209_h10.b1)MSMg01-209H10.TJ (MSMg01no209_h10.g1)
ACCAG391977AG391978
length702706
length of high quality
(start - end)
313 (45 - 357)284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no209_h10.b1 PHD_FILE: MSMg01no209_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:36 2005CHROMAT_FILE: MSMg01no209_h10.g1 PHD_FILE: MSMg01no209_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCTGAACAGGTAGGTTATTCTGTCTTGACACTGGATAACCATGGAA
GGTTTGGTTTGTCTTATTAAGGAAGCTTCTGGCCTTTCTTACTTGTTCCA
TGTACCCAAAAAACTTAATTTTTAAGATAAGGTCTTGCTATGTAGTCCCG
TCTGGCCTACAACTCACTATGTATAAACCAAGCTGGCTTGGAACTCACAA
AGAACCACCTGCCTTGGTCTCTCAAGCCCTGGAATTAAAGGCGTCGCTAC
CATGCCTAGTTCCCTTATTTTATTCTAAGCACAGCTGAGGTATGTTGAAC
ATTTTCTTTTATTCTCCCCCAACAGACCTAAATACAGAAAATACCACAAA
GTTCCTTTAAAATCCCACCCTGACATACCTTTTCTTTCTTTTCTTTTCTC
TTTTCTTCCCTTTTCTTTTCTCTCCCTCCCTCCTTCTCTCCCTTCTTTCT
CTCCCTCCTTTCTCTCCCTCCCTCTCCCTCCCCCCCTCCTTCTCTCTCTC
TCTTTCCTTCTTTTTTTAGGATAGCTTTTCTAGACATGCTTCTTCTGTAT
AGTAACCCTGTTTTGTCCAGGAATTTCCCTTATAGACTACCCTGTCTTTG
AACCCATACGTCTGCCTGCCTCTGCCTCCCTAGTTCTGTGATTATTGCCC
GG
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAGACAAATGGATGGATCTGGAG
GCTATCATCTTGAGTGAGGTAACCCAATCACAAAAGAACACACATGATAT
GCACTGATAAGTGGATATTAGCCCAGAAGTTCAGAATCCTTATTAGAAGG
GGAAACAAAATACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCAAA
GACTGAAGGAACAACCATTCAGAGACTGCCCCACTTGGGGATCCATCCCA
TAAACCAAACCCAGACACTATGTCTGATGCCAACAGGAGCCTGCTGACAG
GACCCCGATATTTTTGTCTCCCGCCCCCCTCCTGCCAGTGCCTGGCAAAT
ACAGAAGTGGATGCTCACAACCCATCCATTGTATGTAGCACATGGTCCCC
AATAAAGGAGCTAGAGAAAGTACCCAGGGAGCTGAAGGGGCCTGATGCCT
CATAGGAGGAACAACCATATAAACTAATCAGTACCCCCAGAGCTCCTTGG
GACTAAACCACCAATCAAAGAAAACACATGGTGGGACTCATGGCTCTATC
TGCACATGTATCAGAGGATGGTCTATTCGGTCACCCCTGCTATTAAAGGC
CCCTGGCCTGGTGAAGGTTCTATTGCCCAGTATAGGGGAATGCCAGGGCC
AATAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_h10.b1 MSMg01no209_h10.b1 CHROMAT_FILE:
MSMg01no209_h10.b1 PHD_FILE: MSMg01no209_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:36 2005
         (313 letters)



>mm_chr9_59498838_59499550
          Length = 713

 Score =  578 bits (299), Expect = e-169
 Identities = 305/307 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccctgaacaggtaggttattctgtcttgacactggataaccatggaaggtttgg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccctgaacaggtaggttattctgtcttgacactggataaccatggaaggtttgg 263

                                                                       
Query: 64  tttgtcttattaaggaagcttctggcctttcttacttgttccatgtacccaaaaaactta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttgtcttattaaggaagcttctggcctttcttacttgttccatgtacccaaaaaactta 323

                                                                       
Query: 124 atttttaagataaggtcttgctatgtagtcccgtctggcctacaactcactatgtataaa 183
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 324 atttttaagataaggtcttgctatgtagtctcgtctggcctacaactcactatgtataaa 383

                                                                       
Query: 184 ccaagctggcttggaactcacaaagaaccacctgccttggtctctcaagccctggaatta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccaagctggcttggaactcacaaagaaccacctgccttggtctctcaagccctggaatta 443

                                                                       
Query: 244 aaggcgtcgctaccatgcctagttcccttattttattctaagcacagctgaggtatgttg 303
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 444 aaggcgtcgctaccatgcctagttcccttatttaattctaagcacagctgaggtatgttg 503

                  
Query: 304 aacattt 310
           |||||||
Sbjct: 504 aacattt 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)