BAC Information

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BAC

Clone NameMSMg01-212H11
Chromosome9 (Build37)
Map Location 92,807,949 - 92,808,301
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4, Plod2, LOC100039921, LOC100039931, LOC100039944, LOC667009
Downstream geneLOC100040114, LOC674371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212H11.T7 (MSMg01no212_h11.b1)MSMg01-212H11.TJ (MSMg01no212_h11.g1)
ACCAG393810AG393811
length730732
length of high quality
(start - end)
596 (47 - 642)352 (381 - 732)
definitionCHROMAT_FILE: MSMg01no212_h11.b1 PHD_FILE: MSMg01no212_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:14 2005CHROMAT_FILE: MSMg01no212_h11.g1 PHD_FILE: MSMg01no212_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCACCTGACGAATACCGAATGGCAGAGAAGCACCTGAAAAAATG
TTCAACATCCTTAATCATCAGGCAAATGCAAATCAAAACAACCCTGAGAT
TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGCATGGATGTGGAGAAAGAGGAACACTCCTCCATTGTAGGTG
GGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCA
GAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGC
ATTTATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTAT
GTTCATAGCAGCCTCACTTATAATAGCCAGAAGCTGGAAAGAACCCAGAT
GCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATG
GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAA
ATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAA
GGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACC
TAGGATACCCAAGATATAAGATACAATTTCCTAAATACATGAAACTCAAG
AAAAATGAAGACTGAAGTGTGGACACTATG
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCAGATGAGGGACCAAGAGAGAA
GGAGAAGGAGATCCACCATGCTGCCAGAAGAGAGGAGATGCCGCACCTGA
GACAGTATGGGGTCAGTATGAGCTGCAAGAGAGAAACCTTTAATCCCAGT
ACCCAGGAGGTAAAGGCAAGTGGATAGCTAAGAAGTCACGGCCACTCTGG
TCTTCCCAGTGAGTTCCAAGCCAACCAGAACTGCATAGTGAGATTGTATT
TCAAAAAGAAAATAAAACACACAAAACAAACAAAAAACCTCAAGTGAAAA
TAAATTTTGAAATCTTTAACAAAAAACACAGAATAACAATGAGGAATAAC
AAGAACAGAAAAAAATCCAGCACAAAAAAAGGCAAGTTAAACCAAAGTAA
CAACAAAAACCCTCTAAATTTAACTGTGCTGAAATCTGTAAATCGCCTTA
AATTATATTATATATTATATTCTCTATTTTAATGTCTTCTTTCATAATTC
TTGACAGTCTAACCTCTAATGACATATGTACAATGTTCTATCTGTAGAAA
AAGACTTATACTATTGATCTATCTTATGCTAATGCTGGGAATAATAAAAA
TTACATGTATCCACTGCCAAAATCAAAATGAGGGCTGAGGTGATGGCTAG
AACAGGTACGAGTGCTTGCAACACATACGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_h11.g1 MSMg01no212_h11.g1 CHROMAT_FILE:
MSMg01no212_h11.g1 PHD_FILE: MSMg01no212_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:14 2005
         (352 letters)



>mm_chr9_92807750_92808501
          Length = 752

 Score =  644 bits (333), Expect = 0.0
 Identities = 348/353 (98%), Gaps = 1/353 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaataacaatgaggaataacaagaacagaaaaaaatccagcac-aaaaaaaggcaagtta 59
           |||||||||||| ||||||||||||||||||||||||||| |  ||||||||||||||||
Sbjct: 200 gaataacaatgaagaataacaagaacagaaaaaaatccagtaggaaaaaaaggcaagtta 259

                                                                       
Query: 60  aaccaaagtaacaacaaaaaccctctaaatttaactgtgctgaaatctgtaaatcgcctt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaccaaagtaacaacaaaaaccctctaaatttaactgtgctgaaatctgtaaatcgcctt 319

                                                                       
Query: 120 aaattatattatatattatattctctattttaatgtcttctttcataattcttgacagtc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaattatattatatattatattctctattttaatgtcttctttcataattcttgacagtc 379

                                                                       
Query: 180 taacctctaatgacatatgtacaatgttctatctgtagaaaaagacttatactattgatc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 taacctctaatgacatatgtacaatgttctatctgtagaaaaagacttatactattgatc 439

                                                                       
Query: 240 tatcttatgctaatgctgggaataataaaaattacatgtatccactgccaaaatcaaaat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tatcttatgctaatgctgggaataataaaaattacatgtatccactgccaaaatcaaaat 499

                                                                
Query: 300 gagggctgaggtgatggctagaacaggtacgagtgcttgcaacacatacgttg 352
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 500 gagggctgaggtgatggctagaacaggtacgagtgcttgcaacacatgcgttg 552


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space:   254849
Effective search space used:   254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)