BAC Information

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BAC

Clone NameMSMg01-212N10
Chromosome9 (Build37)
Map Location 78,300,475 - 78,408,009
singlet/doubletdoublet
Overlap geneMto1, Eef1a1, Slc17a5
Upstream geneLrrc1, Klhl31, Gclc, LOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik
Downstream geneCd109, LOC384957, EG666456, LOC436085, LOC235509
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212N10.T7 (MSMg01no212_n10.b1)MSMg01-212N10.TJ (MSMg01no212_n10.g1)
ACCAG394048AG394049
length736735
length of high quality
(start - end)
314 (49 - 362)282 (79 - 360)
definitionCHROMAT_FILE: MSMg01no212_n10.b1 PHD_FILE: MSMg01no212_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:43 2005CHROMAT_FILE: MSMg01no212_n10.g1 PHD_FILE: MSMg01no212_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,407,699 - 78,408,009)(78,300,475 - 78,300,754)
sequence
CATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTACCGCATGTGACAAACTCATACTCCAGGGCCAACCCATTTA
TTAAATAGTAGTAGTTTAACGTCTATTTTAGAATTAAAATGAGTATAAAT
AGATATCCTCATGTCTTTTTAAATTAAGAATTATTTTTATATTTCTAAAT
TATGTATTTTTGTCTGTGTGTCGCTATGTGCATGAGAATGGAGTTGCCCT
CCAAGGCCAGAGGTGTCAGGTCCCCAGGAGTTACAGAAGGATATAAGCCA
CCCATTGTGGATTCTGGGGGCCAAACTCAGGTCCTCTGCAAGAGAAGTGT
GTACTGTCAACATTTAAACCTTCTCTCCCGCCTCGTCATGTGGCTGTCTT
TGACCCAGCGCCTTATCTCAGATACCTCTGCTCTGAAGGCCATGTCACCA
TCACTGGCTGCATATAAGACCCTCAGCTGGTTTCACTCTCTGTTCCTGCT
TCTTTCCCTGAGATGCTGACAGGCTAGACTCAAACTCTGAGCTCACATCA
CCCTCCAGCTGAAACCCCGTGGTTATCTGAGGCTACATGTGTAGAGCACC
ACACCCTGCATGCACAGTTCCTATAAACCATTTTAATATAATGGAGACTG
GATAATGAAAAACAGATCCTGATAAGTCCTTCCAATCTCTTCACTTTTCC
TTCATGTCAGCCTCCAGCTGTGATAATGACACCGTN
TCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATATAAAGTACTTACATTCT
ATTTTCTTCTGTGGTAACAATGAGGAAAATACTTTACTGGTTTGTTTAGT
TTTGTTTTGTTCTTAATCATTTAGCAGATGGAAGTACAATTTATGCAGAG
AGTGTAATTCTGACTACTGGGACATTTCTGAGAGGCATGATCATAATTGG
ATTGGAGATGCATCCTGCAGGACGTTTGGGGGATCAGCCCTCCATAGGGT
TGGCTCAGACTCTGGAGAAGTTGGGATTTATGGTAGGAAGACTAAAGACT
GGAACTCCTTTTTTTTTCGCCCCCCCCCCATTAATTTCTCCATTCTAAAC
AAGCACACACCAGATGATCCATCCATACCATTCAGCTTTCTCAGTGACAG
CGTGTGGATCAAGGTAAGACAGTTACAGAAACCCGGGTTGATGGCTGATA
CTAGGTATTCACAGCAGGACAGATCCTAACTGTCTTTTTCCTCTCCTTCT
GCTGTCATTTTAAAGTTTTGCTTTGTTTTTATTTATGTGCCTGTTAGTTA
ATTTAGCAATTGGGTCTTTTCCTATACATTGCTAAATTTCATTATTTCAT
TTCTATATAACTTACTTTGTCTACTGCCTCAGTTACTTTTCTGTTGCTAA
GACACTATGACTAAGGCATCTTACAGAAGATTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_n10.b1 MSMg01no212_n10.b1 CHROMAT_FILE:
MSMg01no212_n10.b1 PHD_FILE: MSMg01no212_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:43 2005
         (314 letters)



>mm_chr9_78407675_78408388
          Length = 714

 Score =  571 bits (295), Expect = e-167
 Identities = 307/311 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctaccgcatgtgacaaactcatactccagggccaacccatttattaaatagtag 63
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 335 ggaattctaccgcatgtgacaaactcatactctagggccaacccatttattaaatagtag 276

                                                                       
Query: 64  tagtttaacgtctattttagaattaaaatgagtataaatagatatcctcatgtcttttta 123
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 275 tagtttaacgtctattttagaatttaaatgagtataaatagatatcctcatgtcttttta 216

                                                                       
Query: 124 aattaagaattatttttatatttctaaattatgtatttttgtctgtgtgtcgctatgtgc 183
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 215 aattaagaattatttttatatttctaaattatgtatttttgtctgtgtatcgctatgtgc 156

                                                                       
Query: 184 atgagaatggagttgccctccaaggccagaggtgtcaggtccccaggagttacagaagga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 atgagaatggagttgccctccaaggccagaggtgtcaggtccccaggagttacagaagga 96

                                                                       
Query: 244 tataagccacccattgtggattctgggggccaaactcaggtcctctgcaagagaagtgtg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  tataagccacccattgtggattctgggggccaaactcaggtcctctgcaagagaagtgtg 36

                      
Query: 304 tactgtcaaca 314
            ||||||||||
Sbjct: 35  cactgtcaaca 25


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no212_n10.g1 MSMg01no212_n10.g1 CHROMAT_FILE:
MSMg01no212_n10.g1 PHD_FILE: MSMg01no212_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:43 2005
         (282 letters)



>mm_chr9_78300275_78300956
          Length = 682

 Score =  542 bits (280), Expect = e-158
 Identities = 280/280 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatataaagtacttacattctattttcttctgtggtaacaatgaggaaaatactttact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatataaagtacttacattctattttcttctgtggtaacaatgaggaaaatactttact 260

                                                                       
Query: 61  ggtttgtttagttttgttttgttcttaatcatttagcagatggaagtacaatttatgcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtttgtttagttttgttttgttcttaatcatttagcagatggaagtacaatttatgcag 320

                                                                       
Query: 121 agagtgtaattctgactactgggacatttctgagaggcatgatcataattggattggaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagtgtaattctgactactgggacatttctgagaggcatgatcataattggattggaga 380

                                                                       
Query: 181 tgcatcctgcaggacgtttgggggatcagccctccatagggttggctcagactctggaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcatcctgcaggacgtttgggggatcagccctccatagggttggctcagactctggaga 440

                                                   
Query: 241 agttgggatttatggtaggaagactaaagactggaactcc 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agttgggatttatggtaggaagactaaagactggaactcc 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)