TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGCTTCTTGCCTAAAAGGTGATTATTGACTTCAGGTATATTTATTT
TTCATATCTGTATAATCTAACCTATCTGATGCCAAACTGCAACTGTGATT
CCTGCTGACGAAAGGACAGAGAAGATGGGCAGGGAATTTCCACTCCAGAA
AAAGAGCAACCCATGCCCCAGAAGGAGAGCAGCTCAAAGCGCAGAAGACA
CAGTCAATACATAGACCTTCACATCAGCACAACTAGACTCTTAGAAGATA
ATTAGCTAACATGTTTATTTAAGAGACAAGATGATTCTGCGGCTAATAGC
GTCTGCTCCCAGCCTGACAACCTGTGTTTAATACCTGGGACCCATTCAGT
AAGAGGGAAAAGACTCAGCTAGGTTGCTGTCTCCTGACTTCCATGTGTGT
GCTATGGCCTGTGTGCCCACAAACACATACACAGGCATACGCAAATATAT
AAAACACATAGTTTTGTAAGTCAAAGAATATGTGAAGCCTTCAAACGGGT
TATGGCTGATTTTTGCTCTTGTTTGTTCATGACAAGTTCTCATGTATCCC
AGGCAGACGATACAAGCTCGCTACATAGCTGCGGATGGCCTTGAACTCCT
CATCCTCCTGCCTCCACCTCTCCAGGGTGGCGGTGACAGGTGCGTACGGC
CACACCCAGAGTTCTGGGTCTGAGGTTCTGAGTGTTATTCTC

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCCCCAAGTCCCATTTGGATTGCAA
CCAGGTCAAAGAAATCCTTACCCCGTATGTGTGCAGAGGCACACCGTAAG
TACCCCTGCAGACAGCACAAAGTTAGAATGTGGCTTATACCAACACTAGG
AGACAGAGGCAGGCAGATCTCTGAGTTCGAGGCCAGCCGTGAATACAGAG
TAAGTTCCAGGGCAGCCAGGGCTACACAGAGAAACCCTGGCTTAGAAAAC
AAAAGTATGTAGAGTACAGACTAAAAGTGTTCCTGCCTGTCCCTCCTGTC
CTCTGTCAAGTTTACCATACTGCCGTCGCCCGACATGAGCTAGCCTTAGG
AAACAGTTGTGTGTGGCATCTTGGAGCTCAGGATCCCACAGATGCCTGCA
TGCCCCACCAGTTCGTGCATTTCCCTCTATGGTCAGTGCCTGAGCCTGTG
GGGCCTCAGAGCATCGCTGGGATGTTCAGCTCGGCCACTGGGTGGCGCTA
GCAGCCTAGTCTTCTCCCACAATCATGGTCACAAAAATACCTGTGCTTTG
TCCCAAGTTGAGGACTCGTTATAAAATCCTTATAGGGTGGATTCCATTTT
TAACAACCTCTTTGTTGTTTTGTTTTGTTGTTTTTCTTTTTCCTTTTGTT
TGTAGAAAGTATTTTTTACCCCATTCATTAGGCCCAAGTCTATCAAG

Query= MSMg01no212_n23.b1 MSMg01no212_n23.b1 CHROMAT_FILE:
MSMg01no212_n23.b1 PHD_FILE: MSMg01no212_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:45 2005
         (608 letters)



>mm_chr9_121434697_121435704
          Length = 1008

 Score =  750 bits (388), Expect = 0.0
 Identities = 397/400 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgatgccaaactgcaactgtgattcctgctgacgaaaggacagagaagatgggcaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tctgatgccaaactgcaactgtgattcctgctgacgaaaggacagagaagatgggcaggg 341

                                                                       
Query: 61  aatttccactccagaaaaagagcaacccatgccccagaaggagagcagctcaaagcgcag 120
           ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 340 aatttccactccagaaaaagagcgacccacgccccagaaggagagcagctcaaagcgcag 281

                                                                       
Query: 121 aagacacagtcaatacatagaccttcacatcagcacaactagactcttagaagataatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 aagacacagtcaatacatagaccttcacatcagcacaactagactcttagaagataatta 221

                                                                       
Query: 181 gctaacatgtttatttaagagacaagatgattctgcggctaatagcgtctgctcccagcc 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 220 gctaacatgtttatttaagagacaagatgattctgtggctaatagcgtctgctcccagcc 161

                                                                       
Query: 241 tgacaacctgtgtttaatacctgggacccattcagtaagagggaaaagactcagctaggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 tgacaacctgtgtttaatacctgggacccattcagtaagagggaaaagactcagctaggt 101

                                                                       
Query: 301 tgctgtctcctgacttccatgtgtgtgctatggcctgtgtgcccacaaacacatacacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 tgctgtctcctgacttccatgtgtgtgctatggcctgtgtgcccacaaacacatacacag 41

                                                   
Query: 361 gcatacgcaaatatataaaacacatagttttgtaagtcaa 400
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 40  gcatacgcaaatatataaaacacatagttttgtaagtcaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space:   596804
Effective search space used:   596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no212_n23.g1 MSMg01no212_n23.g1 CHROMAT_FILE:
MSMg01no212_n23.g1 PHD_FILE: MSMg01no212_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:45 2005
         (364 letters)



>mm_chr9_121367430_121368193
          Length = 764

 Score =  681 bits (352), Expect = 0.0
 Identities = 361/364 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccgacatgagctagccttaggaaacagttgtgtgtggcatcttggagctcaggatcccac 60
           ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 ccgacgtgagctagccttaggaaacagttgtgtgtggcatctgggagctcaggatcccac 260

                                                                       
Query: 61  agatgcctgcatgccccaccagttcgtgcatttccctctatggtcagtgcctgagcctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatgcctgcatgccccaccagttcgtgcatttccctctatggtcagtgcctgagcctgt 320

                                                                       
Query: 121 ggggcctcagagcatcgctgggatgttcagctcggccactgggtggcgctagcagcctag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggggcctcagagcatcgctgggatgttcagctcggccactgggtggcgctagcagcctag 380

                                                                       
Query: 181 tcttctcccacaatcatggtcacaaaaatacctgtgctttgtcccaagttgaggactcgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttctcccacaatcatggtcacaaaaatacctgtgctttgtcccaagttgaggactcgt 440

                                                                       
Query: 241 tataaaatccttatagggtggattccatttttaacaacctctttgttgttttgttttgtt 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tataaaatctttatagggtggattccatttttaacaacctctttgttgttttgttttgtt 500

                                                                       
Query: 301 gtttttctttttccttttgtttgtagaaagtattttttaccccattcattaggcccaagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtttttctttttccttttgtttgtagaaagtattttttaccccattcattaggcccaagt 560

               
Query: 361 ctat 364
           ||||
Sbjct: 561 ctat 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)