BAC Information

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BAC

Clone NameMSMg01-213P05
Chromosome9 (Build37)
Map Location 48,042,522 - 48,042,813
singlet/doubletsinglet
Overlap geneD930028F11Rik
Upstream geneCadm1, LOC100043303
Downstream gene4432416J03Rik, EG640268, EG434401, LOC667933, Rexo2, Rbm7, EG434402, Nnmt, Zbtb16, Htr3a, Htr3b, Usp28, LOC100042785, Zw10, EG629400, Tmprss5
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213P05.T7 (MSMg01no213_p05.b1)MSMg01-213P05.TJ (MSMg01no213_p05.g1)
ACCAG394772AG394773
length716811
length of high quality
(start - end)
295 (66 - 360)240 (75 - 314)
definitionCHROMAT_FILE: MSMg01no213_p05.b1 PHD_FILE: MSMg01no213_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:07 2005CHROMAT_FILE: MSMg01no213_p05.g1 PHD_FILE: MSMg01no213_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTACATTTCTCTCTTCCTACCTCTGCAACTCTGTCTGTTTGTCTCAG
CTTTTGGAGGCCCATGATGCCTTGTAAAACCCTTTAGAGATTCCCATTCT
GCCAATTGGCAGTCAATGCAGTCCTTAGCAAAACCAGTCTTTTCGAGTTA
GATGTTTTATCCCTTGCTACCATGTACCTTTGCCTGTCTTTGACCCCACT
TTGGATATGATAGCGAGTAAGCATCTCATAATCCACTCCAGGCTGATCCT
CACCAATGGCCTTTCGAGAGGTCTATTGCCATATCTTCTGCCTGTCACAG
CTTCCTGTTTTGTTTACCACACCGTCGCTCCCATGGAATAATTTGGAAGG
TTCCATTCTAGTTTCCCCCCCCTCTCACATAGCTTTGTGCTCTGCCTGGT
ATCCTCCACTCACAGGTAAGGATGGCGATGCAGAACACAGAATATAGGAT
TTGGATTCAAAAGATCTATTTGATTCTTGGCTCCTCCTTTTCTGATTTTG
TGATCTTGTTCGGACCACCTGGCTTTCTGTGCTTTGATGCCCCGTATAAA
ACCACAGGGTAAGTAGTTGTATTGTTCTGTAGTCACCAGTGTAGCCATAC
TCTACTGTTGTTATTTACCCCTTTCCAACCACCATTCCAGTCTAGTTTTT
AACGCTTCCATCTTAT
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGCTGGATATGTTAAGGATGAAAG
GTCTGGAAGATAAGTAAGAAGACCTGTTGTCGAGTGGGCAGCAAGAGACA
TGAGCCTATAATGGAGGGAAAAAAAGCTTTGGGCTTAAATGAAAAGCTTA
GAGTTGCCAGCATATAGATGTTACATAAAGGCACAGGAATAAGGGAGATG
TAAGGGACCCAGCTGAATGAATGAGTGGTTGGATGCATGAGGAGGATGAG
AGGGATGAGGGGAGGTTCCCTTTTTCTTCTTTTCCTTCCCCCTTCCCCTC
CCCCCTCCCCTTTTTTTTTTTTCCCCCCCCCCCCCCCCCTCTTCCCTTTT
TTCCTTTTTTTTTCTTTTTTTTTTCTTTCCCCCCCCCCCAAAAAAAACCT
TTCCCTCGCCTTTTCCCCCTCTTTTCCCCTTCCTTTTTCTCCCTCCCCTT
CCCTTTCTTTCCTTCCCTTTTTCCTTTTTTCCTCCCTTCCTCCCTTATCT
TCTTCCCCCTTTTTTTTTCCCCCCCCCCCCCCGCCTTTCTTACGTTTCCC
CCCTTTTCTTCCCCTCCCCCCCTCTCCCTACTTTACACCCTTTGCCCCTC
CTTCCTTTCCTTTTTTGTCTCCCCCTCCTTTTTCTTCTCCCCCCCCCTTG
CCACCTTTTCCTTCCCCTCCATTTTTCCCGCTCTTCTTTTTTTCCTTTTT
CTCCCTTATTCGTCCACTTCCCCCACTCTTTTCCCTTTTCCCCCCTCTTT
TTTCTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_p05.b1 MSMg01no213_p05.b1 CHROMAT_FILE:
MSMg01no213_p05.b1 PHD_FILE: MSMg01no213_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:07 2005
         (295 letters)



>mm_chr9_48042322_48043016
          Length = 695

 Score =  549 bits (284), Expect = e-161
 Identities = 290/292 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcctacctctgcaactctgtctgtttgtctcagcttttggaggcccatgatgccttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 cttcctacctctgcaactctgtctgtttgtctcagcttttggaggcccatgatgccttgt 433

                                                                       
Query: 61  aaaaccctttagagattcccattctgccaattggcagtcaatgcagtccttagcaaaacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aaaaccctttagagattcccattctgccaattggcagtcaatgcagtccttagcaaaacc 373

                                                                       
Query: 121 agtcttttcgagttagatgttttatcccttgctaccatgtacctttgcctgtctttgacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 agtcttttcgagttagatgttttatcccttgctaccatgtacctttgcctgtctttgacc 313

                                                                       
Query: 181 ccactttggatatgatagcgagtaagcatctcataatccactccaggctgatcctcacca 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 312 ccactttggatatgatagcgagtaagcatctcagaatccactccaggctgatcctcacca 253

                                                               
Query: 241 atggcctttcgagaggtctattgccatatcttctgcctgtcacagcttcctg 292
           |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 252 atggcctttcgagaggcctattgccatatcttctgcctgtcacagcttcctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)