Query= MSMg01no214_j06.b1 MSMg01no214_j06.b1 CHROMAT_FILE:
MSMg01no214_j06.b1 PHD_FILE: MSMg01no214_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:56 2005
(264 letters)
>mm_chr9_122381482_122382145
Length = 664
Score = 501 bits (259), Expect = e-146
Identities = 259/259 (100%)
Strand = Plus / Plus
Query: 5 gaattcatgcactcctgttttcaggacttcgtaccaagcacacggaagtctgtggttcgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgcactcctgttttcaggacttcgtaccaagcacacggaagtctgtggttcgt 264
Query: 65 ggaaccatcattcctaaaaattccatctgattaaaatttaagatgggctgaaatgtattc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggaaccatcattcctaaaaattccatctgattaaaatttaagatgggctgaaatgtattc 324
Query: 125 tcaagaagcacagaattagattcactgtgcacacaagtctcaatgtgtttaaaacaagtc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcaagaagcacagaattagattcactgtgcacacaagtctcaatgtgtttaaaacaagtc 384
Query: 185 acacagggaacagtctttaaatcagtctgatggggtctcacaggaggagagaggagggga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acacagggaacagtctttaaatcagtctgatggggtctcacaggaggagagaggagggga 444
Query: 245 tgaggagagagtggtgttg 263
|||||||||||||||||||
Sbjct: 445 tgaggagagagtggtgttg 463
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space: 167025
Effective search space used: 167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no214_j06.g1 MSMg01no214_j06.g1 CHROMAT_FILE:
MSMg01no214_j06.g1 PHD_FILE: MSMg01no214_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:56 2005
(353 letters)
>mm_chr9_122456029_122456781
Length = 753
Score = 623 bits (322), Expect = 0.0
Identities = 346/354 (97%), Gaps = 2/354 (0%)
Strand = Plus / Minus
Query: 1 catcacatccttagtcaggaagcagaatgcgctgctgctccatgaaccttatgcagtcca 60
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 730 catcacatccttagtcaggaagcagagtgtgctgctgctccatgaaccttatgcagtcca 671
Query: 61 ggatttcagctagggaatggtgctgcccatagtggatggtcttcccacatcagttactgg 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 670 ggatttcagctagggaatggtgctgcccatagtggatggccttcccacatcagttactgg 611
Query: 121 aatcaagataatccctacagacatgcctagggtcccttcttccaggtgaatttatatttc 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 610 aatcaagataatccctacagacatgcctaggggcccttcttccaggtgaatttatatttc 551
Query: 181 taggagtgaatgctatcgtcacagatgtgagtaccctcaaacacccta-cagtaagggac 239
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 550 taggagtgaatgctatcgtcacagatgtgagtaccctcaaacaccctacca-taagggac 492
Query: 240 agggtaagtgagtgttacatgctagctaagtgatttgtacagcttctcatgctatttaat 299
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 491 agggtaagtgtgtgttacatgatagctaagtgatttgtacagcttctcatgctatttaat 432
Query: 300 gatccccttttatacagggtggagtgacaatgtgtccccagcagattgactctg 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gatccccttttatacagggtggagtgacaatgtgtccccagcagattgactctg 378
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space: 255936
Effective search space used: 255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
