BAC Information

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BAC

Clone NameMSMg01-215J19
Chromosome9 (Build37)
Map Location 115,159,876 - 115,160,104
singlet/doubletsinglet
Overlap geneStt3b
Upstream gene4921528I07Rik, Bcl2a1c, 4930520O04Rik, Crtap, Glb1, Ccr4, Trim71, LOC100043808, Cnot10, LOC665772, Dync1li1, Cmtm6, Cmtm7, Cmtm8, Gpd1l, LOC100043813, Osbpl10, LOC100043812
Downstream geneLOC100039567, LOC670467, EG546164, Gadl1, EG668829, Tgfbr2, LOC100043817, LOC100043819
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215J19.T7 (MSMg01no215_j19.b1)MSMg01-215J19.TJ (MSMg01no215_j19.g1)
ACCAG395801AG395802
length726894
length of high quality
(start - end)
232 (124 - 355)73 (223 - 295)
definitionCHROMAT_FILE: MSMg01no215_j19.b1 PHD_FILE: MSMg01no215_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:20 2005CHROMAT_FILE: MSMg01no215_j19.g1 PHD_FILE: MSMg01no215_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTCT
AAGTTCTCCACATTCATAGAAAATTATTTCTACTCAAAATTAATATAAAT
CAAACTTAATTTCATCCTACAGATTAAAAAAATGTACACTTAAATTTTAT
CCTACAGGTCGGAAAAGCTATGTCTTCCAATGAAACGGCCGCCTATAAAA
TCATGAGGTCCCTTGATGTCGATTATGTGTTGGTTATTTTCGGAGGAGTG
ATTGGCTATTCCGGGGACGATATCAACAAGTTCCTCTGGATGGTCAGGAT
AGCTGAAGGGTATCATCCCAAAGACATCCGGGTAAGCAGCACACAGTCCA
CGTTTTTTTTTTGCTCTCACCCCCGCCCATTTACCTTCTTTCCCTTCCGT
TCCTCACTGGGGCCCCGCCTGAAAAGAAACACCTGAGGATGGGGCTAGAG
GTGTGCGTTGGCAACACACCCAGAGGCTGCGCTGTTTTCCTCCTGTCCTG
CTCTATTGCTGTAGTTACTCCAGTCATTAAAAACAGTAACTTCACTTCGG
ATTTGGAAGCCTCGTGTGCCGAGGACCAGCTTGTTAGTAGCTTGTCTGTG
AAAGCATTACCCTATACAACATGTGTACACACGGATGTAATGTGATCCAG
ATTGTTGTTTGATGACCTCTGATGTTCCCCAGTGAAGGTGCCTTATAGAA
CGCTTATCTCTGAATAACATCTTTCT
AAGGGCAAGCAGGAAAAAATAAACAGCCGGGCCCCCTTATAATTTTATCA
ACGAGAAGTGTGTAGCCTGGAGGACGACTGGCCGTACCGTACTCAGGGAG
ANNANAGAAGGATTTGCCCAAAAAAAAGTGAAANGGAAAGAGGAGACAAG
GAGGGGNAGGAGAGGNATTTTGACCCCCTTTGAGAGGAGATTCCTGGTGA
AGGTGCTAGGATTGTCAGGTATTCCTTGGGTCTTCTCTGACCGGTCACAT
CGGTGAGTATCTAGTCACGTGACTGTGTGATGAGGAGGGAAGGATGAGGT
TGTATATCCCTGCACAGGACCCTGGAGCTGAATTGTAAGTAGACCCTAGT
GAATCGACAAAAAATAGTGTTTTTTTTTGGGAAACAAAACAGGACGAGAA
GGAAAAAAGAGTTTTTTTTTTTTCACCCCCCCCCCCCACCAANGAAATAT
ATAGATATGATATGTATGAATGGTATCGCCCCCAAAAAAAAAAAAAAAAA
AATGTGGGGGGGGGGGAGTGAAGCTATAGGATTGAAAATGAGAGTTGGGA
GATAAAGTATGATAAAAGTAGGATATATTGATGGTGTAACAGGAGTAACA
GAAAAATGATTTGTAACAGAAAAAATAAACATTATGGGAAATCAGGGAAA
AAAAGAAGTAAGGTTATATTATATAAAACAATAAATGAAGAGAAGAAAAA
AATAAAAATTATAATTTATGGGTAAAAAAAAAAACAACACATTTATAAGA
GAACATATTTTTATTATTTATATAATCAACAAAACATATAAAATAAACTA
AAACTAATAAAATTAATACATAAGAAAAGAAAGTATAATATAAAAATTTA
TGTGAATAAATTATATAAAAAATATAATAATAATTTACATAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_j19.b1 MSMg01no215_j19.b1 CHROMAT_FILE:
MSMg01no215_j19.b1 PHD_FILE: MSMg01no215_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:20 2005
         (232 letters)



>mm_chr9_115159676_115160307
          Length = 632

 Score =  427 bits (221), Expect = e-124
 Identities = 227/229 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaaaaaaatgtacacttaaattttatcctacaggtcggaaaagctatgtcttccaatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ttaaaaaaatgtacacttaaattttatcctacaggtcggaaaagctatgtcttccaatga 370

                                                                       
Query: 61  aacggccgcctataaaatcatgaggtcccttgatgtcgattatgtgttggttattttcgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aacggccgcctataaaatcatgaggtcccttgatgtcgattatgtgttggttattttcgg 310

                                                                       
Query: 121 aggagtgattggctattccggggacgatatcaacaagttcctctggatggtcaggatagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 aggagtgattggctattccggggacgatatcaacaagttcctctggatggtcaggatagc 250

                                                            
Query: 181 tgaagggtatcatcccaaagacatccgggtaagcagcacacagtccacg 229
           ||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tgaaggggagcatcccaaagacatccgggtaagcagcacacagtccacg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)