Query= MSMg01no217_m07.b1 MSMg01no217_m07.b1 CHROMAT_FILE:
MSMg01no217_m07.b1 PHD_FILE: MSMg01no217_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:31 2005
(433 letters)
>mm_chr9_123016709_123017541
Length = 833
Score = 700 bits (362), Expect = 0.0
Identities = 398/414 (96%), Gaps = 10/414 (2%)
Strand = Plus / Minus
Query: 17 gaattcaagtcgatcagagaagtacagtgagacctggtctccagaacaaacgacaatggt 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaattcaagtcgatcagagaagtacagtgagacctggtctccagaacaaacgacaatggt 566
Query: 77 cagtgtgcagcaggacaggaggaaacatgccctgcctgccattgtctgggttttggtaaa 136
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 565 cagtgtgcagcaggacaggaggaaacgtgccctgcctgccattgtctgtgttttggtaaa 506
Query: 137 ctttagtacagacaaggttcccggtacagatgtgacatttacttttttcccctttaca-t 195
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
Sbjct: 505 ctttagtacagacaaggttcagggtacagatgtgacatttactttttt-ccctttacatt 447
Query: 196 tttttttttttaaatggcaagcagagggggaagcaatcttgactgtgtggagttcccata 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tttttttttttaaatggcaagcagagggggaagcaatcttgactgtgtggagttcccata 387
Query: 256 aggcaagatagagccaggtctgcctgcctgatttgctctgtcaggctctggccacaccct 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aggcaagatagagccaggtctgcctgcctgatttgctctgtcaggctctggccacaccct 327
Query: 316 tacctgtgtggagaagtagtgattcgttctgttattttactgaagtgtttcaaacata-- 373
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 326 tacctgtgtggagaagtagtgattcgttctgttattttactgaagtgtttcatacatagc 267
Query: 374 --ttttttctttgttcattactgggtttttggagtctcatcagaaaatgggtgt 425
|| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 266 aatt----ctttgttcattactggatttttggagtctcatcagaaaatgggtgt 217
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space: 349376
Effective search space used: 349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no217_m07.g1 MSMg01no217_m07.g1 CHROMAT_FILE:
MSMg01no217_m07.g1 PHD_FILE: MSMg01no217_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:31 2005
(261 letters)
>mm_chr9_122875058_122875718
Length = 661
Score = 474 bits (245), Expect = e-138
Identities = 257/261 (98%)
Strand = Plus / Plus
Query: 1 gtctagttaatccttattatatctgtgttctttagctcaatgcttggcacggactaggta 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 201 gtctagttaatccttattatatctgtgttctttagctcaatgcttggcacagactaagta 260
Query: 61 tagattgggtgttagacacaatttttcagtgtgtgtgcgcaagtgtgcacatgtgctcca 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 tagattgggtgttagacacaatttttcagtgtgtgtgcgcaagtgtgcacatgtgctcga 320
Query: 121 gtggatgcatatataaacactaccaaggtccagattcctggtctatgactcctaccccat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggatgcatatataaacactaccaaggtccagattcctggtctatgactcctaccccat 380
Query: 181 cccccaaagcagctgatgattcttatccttatgaggtttcttgctttggaatgtctacta 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 cccccaaagcagctgatgattcttatccttatgaggtttcttgctttggaatgtctacaa 440
Query: 241 ataaaattataccaaaaaata 261
|||||||||||||||||||||
Sbjct: 441 ataaaattataccaaaaaata 461
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 661
Length adjustment: 9
Effective length of query: 252
Effective length of database: 652
Effective search space: 164304
Effective search space used: 164304
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
