BAC Information

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BAC

Clone NameMSMg01-217O22
Chromosome9 (Build37)
Map Location 23,891,684 - 23,891,954
singlet/doubletsinglet
Overlap genenone
Upstream geneBmper, LOC100040866, LOC100040878, LOC100040893
Downstream geneNpsr1, Dpy19l1, Cypt4, Tbx20, LOC666251, LOC100040960
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217O22.T7 (MSMg01no217_o22.b1)MSMg01-217O22.TJ (MSMg01no217_o22.g1)
ACCAG397284AG397285
length1,242752
length of high quality
(start - end)
271 (127 - 397)189 (120 - 308)
definitionCHROMAT_FILE: MSMg01no217_o22.b1 PHD_FILE: MSMg01no217_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:47 2005CHROMAT_FILE: MSMg01no217_o22.g1 PHD_FILE: MSMg01no217_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGTACTTTGGGCGCTAAGACTCCTAAGGGAGAGGATCCGCGGAATTCT
TGAGGCAAGGGGATGCCTTTTGTGGTTAGAACGTGTCCCTCAGAATGTAT
GTGCTGCCCCCAGGGTGGCAAACCCCGAGGTGGAGCATACTGGGAGATAT
TGGAGTCCTAAGAACCCTGTCCACATCAGCCCCTTAATGTCATCTTTCAG
GATTAACTTTTCCACTCTCCTACGCCTGGGTCAATCACTGCAACAGCTCA
TAGTCAAGAAATGAGGAGTTTACCCTAAACAGCTCAAGGCCTTCATAAGA
GGTGCTCACCTGGTGTTGGACTTCTCATTTTCCCAAGTCATGAGTCAAAA
TAAATTTCACTAAAAAATACTACCCACTCTCAGATTTAGCAACACAACTT
TTTTGATGATAGACACATTTCCAAAACATGCACATGTGTAAATGTGAGTT
TTTTTTTTTCCCCCCCCCCCGAAGANNACCTCCCGTGCAAAAAAAAAGAG
GGCGNCCTNGGCTTTTAAGACGGGGCTTCTCATTAGCTTGGAAGTCATCA
AGTAGGTTAGACTTGGTGGCCAATGAGCCCAGTGAACCACCTATCTACCT
CCCATGTGCCAGGATTACAAATATGGCACTATACCTAGCCCCTTAACAAA
ACATGATTCTAGGATCAAACTCAAATGCTCATGCTGGTAAGCACTGTATT
AAGTAAACAATTATGCTCGCCACTCTGTAAGTTTTGATTCTTCTCTACTA
CGATGCCTAGAACATTCCATCTCACATACTCTTAGGAAAGATGACTGCCT
CTCAACATATTAGGAGATAAGGATTATTTTCCTGTCTTAGCTCATAATTA
TTATAGTCCTTTAATTTCTCCTCGGATGGTTCTCTTTTAGCTTTAAGGTA
AATTTCCTGGATGGCCTATTCTGATTGTTAGTTAACCATTATCTTTAGAT
ATAAAATAATTATGTTCCTTCGTCCAGCCGTTTGCTCTGGCGTTCCCTTG
ATTACTTTTCTTTGTTTTTACTTATTTCTCACAAAATTTTTTTCAAATGG
TTGTTCCTCCTCATGTCACATTTTCCCTTTCTCTTTTTTGTTCTTCCTTT
TTATTATCTCCCATTTTTTTTTTACCTCTTCTTTGTTATCTTACATCTTC
TTCCTTCTTTTTTTTTCCTTTTTTTTCACTTCTATTTTTTTTTTTTTTTA
TTTCATCTTTTATATCCCTTTCTTTATATATTCTTTTATAAA
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCAC
TTGAAAAATTTTTCACCATCCTTAATCATCAGGGAAATGCAAATCAAAAC
AACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATT
CAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTC
CATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTG
GCGGTTCCTCATAATACTGGACATAGTACTACCGGAGGATCCAGCAATAT
TCNCTTCNNGTTACACCCNNACAAGACCGCCNNATCTGGTAAGAAGGATA
CATGTTCCACCACCCCCATAGATAACAAAATTATAATAGCCGGAGGCTGG
AAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACTGAATATGTGGCA
CATCTACTCAATGGAGCACTATTCTGTTATTAATAAGAATGACTTTATGA
CACTCCTAGCCAAACGGATGTACCTGCGATGGCATCCCCCCGAGTGAGGA
AACTACTTCTCAAAGAAACTCCCACCATATGTATTCCACTGATAAGTGGA
TATCAGCCCCCAACCCTAGGATACCCCACTATTTTATCACTCCCCCTTGC
TCAATCACATGCACCCTCACAGGCCTACCGGACCCACTGTATCCCGTTCT
AT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_o22.b1 MSMg01no217_o22.b1 CHROMAT_FILE:
MSMg01no217_o22.b1 PHD_FILE: MSMg01no217_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:47 2005
         (271 letters)



>mm_chr9_23891484_23892154
          Length = 671

 Score =  485 bits (251), Expect = e-142
 Identities = 266/275 (96%), Gaps = 8/275 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaggtggagcatactgggagatattggagtcctaagaaccctgtccacatcag----ccc 56
           |||||||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct: 471 gaggtggagcatactgggagatattggagtcctaagaaccctgtccacatcagtgaa--- 415

                                                                       
Query: 57  cttaatgtcatctttcaggattaacttttccactctcctacgcctgggtcaatcactgca 116
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 -ttaatgtcatctttcaggattaacttttccactctcctacgcctgggtcaatcactgca 356

                                                                       
Query: 117 acagctcatagtcaagaaatgaggagtttaccctaaacagctcaaggccttcataagagg 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 acagctcatagtcaagaaatgaggagtttaccctaaacagctcaaggccttcataagagg 296

                                                                       
Query: 177 tgctcacctggtgttggacttctcattttcccaagtcatgagtcaaaataaatttcacta 236
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 295 tgctcacctggtgttggacttctcattttcccaaggcatgagtcaaaataaatttcacta 236

                                              
Query: 237 aaaaatactacccactctcagatttagcaacacaa 271
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 aaaaatactacccactctcagatttagcaacacaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)