BAC Information

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BAC

Clone NameMSMg01-231F06
Chromosome9 (Build37)
Map Location 87,455,528 - 87,455,819
singlet/doubletsinglet
Overlap genenone
Upstream genePgm3, Rwdd2, Mod1, Prss35, Snap91, C030002E08Rik, Cyb5r4, LOC666777, LOC244958, LOC100039510, 4922501C03Rik, LOC671706
Downstream geneTbx18, LOC671731, LOC100039580, LOC384962, EG272633, Nt5e, Snx14, LOC100039601, Syncrip, 2810026P18Rik, 4930422I07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231F06.T7 (MSMg01no231_f06.b1)MSMg01-231F06.TJ (MSMg01no231_f06.g1)
ACCAG398179AG398180
length718723
length of high quality
(start - end)
321 (46 - 366)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no231_f06.b1 PHD_FILE: MSMg01no231_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:35 2005CHROMAT_FILE: MSMg01no231_f06.g1 PHD_FILE: MSMg01no231_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACTTGAGGAATAACAAATGGCAGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGACGAGGATGTGGAGAAAGAGGAGCACTCCTCCGTTGTTGGTGG
GATTGCAAGCTTGCACAACCACTCTGGAAATCAGTTTGGCGGTTCCTCAG
AAAATTGGACATAGTACTACCTGAGGATCCCGCAATACCTCTCCTAGGCA
TATATCCAGAATATGTCCCAACTGGCACCAACGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGTTTCCCTAATTTCTTTCT
CAGCCTGTTTATTCTTTGTGTAGAGAAAGGCCATTGACTTGTTTGAGTTT
ATTTTATATCCAGCGACTTCACTGAAGCTGTTTATCACGTTTAGGAGTTC
TCTGGTGGAAAATTTAGGGTCACTTATATATACTATCATATCATCTGCAA
AAAGTGATATTTTGACTTCTTCCTTTCCAATTTGTATCCCCTTGATCTCC
TTTTGTTGTCAAATTGCTCTAGCTAGGACTTCAAATACTATGTTGAATAG
GTATGGATAAACTAGGTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATTCAGTTGTAAGACATAGAACA
GGGTCTTAAGTGAATGCTTAATCAATTCACTCATACCTGATACAAAAGTA
ATATGAAGAGAGCTTACAGATCTCCAACATATTCTATATGAGTTCAAGGG
ATTCAAGGACTTGCTTCTATAGCTATGAAGCTGACCATGGATGGGTCTCT
AATTCATGGGATCTGGCTTAAGAAGAAAGCCACTCAGAAGGAGAAATTAG
TTGCCCGGTGAAGCATGAAAACACTGGAGGGAAAGCACAGGAAGTTCCTT
CAGTCTACCTACCTGTCTATCCTTTTAACCACACGATCTATGATCTTGAC
AGTCAAGAACAGCCTTTCTTCACGCAAGTCTCATCACTGGCAAGCCATTC
CACTCTTCTCTTGAAATTCTTTTTTTTTTTTAATTCTAGATTTTTTTTGT
ATGCTCTACCTGGAAGAAATAAGAAGTACCAATGGGCCTGAAGTAGTTGC
TCAGGAAGAAAATTCAAATTAGTCTCTCGTGTTTTTAGAATGGTACATGG
ATTAAATACTGGGCAGTTCATTGTTTCTGGAGAGTTAAATGAGACTTGAT
ATCCCACTGTATAAATTTGTGCTCGCATGGAATGTGTCTAAACCCACAGT
TTGATTGTGGCCTTTCCTTGACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_f06.g1 MSMg01no231_f06.g1 CHROMAT_FILE:
MSMg01no231_f06.g1 PHD_FILE: MSMg01no231_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:35 2005
         (292 letters)



>mm_chr9_87455328_87456019
          Length = 692

 Score =  542 bits (280), Expect = e-158
 Identities = 289/292 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattcagttgtaagacatagaacagggtcttaagtgaatgcttaatcaattcactcatac 60
           ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 492 aattcagttgtcagacatagaacagggtcttaagtgaatgcttagtcaattcactcatac 433

                                                                       
Query: 61  ctgatacaaaagtaatatgaagagagcttacagatctccaacatattctatatgagttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ctgatacaaaagtaatatgaagagagcttacagatctccaacatattctatatgagttca 373

                                                                       
Query: 121 agggattcaaggacttgcttctatagctatgaagctgaccatggatgggtctctaattca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 agggattcaaggacttgcttctatagctatgaagctgaccatggatgggtctctaattca 313

                                                                       
Query: 181 tgggatctggcttaagaagaaagccactcagaaggagaaattagttgcccggtgaagcat 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 312 tgggatctggcttaagaagaaagccactcagaaggagaaattagttgcccagtgaagcat 253

                                                               
Query: 241 gaaaacactggagggaaagcacaggaagttccttcagtctacctacctgtct 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gaaaacactggagggaaagcacaggaagttccttcagtctacctacctgtct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)