BAC Information

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BAC

Clone NameMSMg01-231G15
Chromosome9 (Build37)
Map Location 45,432,119 - 45,595,459
singlet/doubletdoublet
Overlap geneDscaml1, Cep164
Upstream geneDdx6, LOC100042660, Treh, Phldb1, Arcn1, 1500035H01Rik, Tmem25, BC021608, Mll1, Atp5l, Ube4a, Cd3g, Cd3d, Cd3e, Eva1, A530065I17Rik, Amica1, Scn2b, Scn4b, Tmprss4, Il10ra, Tmprss13, Fxyd6, Fxyd2
Downstream geneLOC640094, Bace1, Rnf214, Pcsk7, Tagln, Sidt2, Pafah1b2, 2610005M20Rik, BC033915, Apoa1, Apoc3, Apoa4, Apoa5, Zfp259, Bud13, 4931429L15Rik, LOC100042722, EG667890
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231G15.T7 (MSMg01no231_g15.b1)MSMg01-231G15.TJ (MSMg01no231_g15.g1)
ACCAG398236AG398237
length811753
length of high quality
(start - end)
320 (46 - 365)252 (74 - 325)
definitionCHROMAT_FILE: MSMg01no231_g15.b1 PHD_FILE: MSMg01no231_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:42 2005CHROMAT_FILE: MSMg01no231_g15.g1 PHD_FILE: MSMg01no231_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,595,145 - 45,595,459)(45,432,119 - 45,432,370)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGGTCCTTACGGTCGCTGGGAGGCAGATGGTGACCTGGCTGGGT
GGCCGTACAAGGTGTGCTTATGTGGCAGGGTGTGGGAGGTAGGCAGGAGG
GACCCTGCCTGTGGTGGTGTACTATGACAGGAGTGTGAAGTGTCACTTGG
CAGGACTTTGCACATGGCTCTGTGATTAGTCCAGGGCTTCTGTCCTCCTT
ACTGGATTGGGTCGATTAAGCTGTGTATATGTGGCTGTGAGCCAGGGCTG
AAGTGGCCGCGTTGGAGGTCTAGAGAGCTTTGTTCTAAGTGCTGAAGCTC
AGTGGTCTGAGCTGTTTTNCTTCTCCCCATAGCAGNACCCCAGCTGTGCA
GACTCTGTGTGTGTGTGTGTATGCCCCCCCCGAGAAAAAAGAAACTTTTT
TCTTGGCGCCGGGTTTCCTCTCTCTTTCTTTCTATCCTTATCTCTCCCTT
CTCTCTTCTCTCTCTCTCCCTCTTTCTTTTTTCCCCCCCTTAGTTTTTTG
TTTTTATTTTCTGTCAACCTCCTCTTCTTCCCCCTTTTTCCTCCCCCCTC
TCTTCCCCCCCCTTTTACTTCTTCTTTTCCCCCTTTTTTTGCTCCCCCTT
CTTTTACCCCCTTTCTCCCTCATTCCCTTTTTTTCTCCTTCCTCTCTCCC
CCTTTTTTCTCTCCCTGCTTTTCTCTCCCCCCCCCCCTTTTTTTTTTATC
CGCCTTTTCCCTTTATCTTATTTTCTCATCTATTCTTATTCCACCCTCCC
CTCTTCCTCCG
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAATGTGTTTCTATTTTCTTAGTTCCC
CGAGGATCCCTTAATGTTGCTTGGGCCCGGTAGAGGTGGAAAGGGCGGGG
AGTAAGGGAAGCTCCACAAAGCACACTTGGCCTGTGGCCATGTGGAGATG
CACCCTGTAGCGATGTTCAGGGAATTGGGGAAGCATCTCAAAACCCCAAA
ATGTCAGAGCTCCTGTCCTTTGTCTAGAAGCTGTATACCTATTAAGATGC
AGATTCCTGGAGAAGACTTTTCCAACTCTTATCCTACCTTTTACATTTCA
CCACTGCTGGACTGGTTTCATATTGCCAGAGCGGGNCCCCACTGGAAAGG
ACTTCTCAGATCTCTGCCACACACACCCACACACACACATTCACATTTTC
GGTGGGCGGGCTTATACCCTTCTCTCTTCCATTATCCGGCTTGATAACCT
AACTTTCATTGTAAGTCTCATCAAAGCTGGCTCTCTGCTCTCCTGCGTTT
GTGCCCTTTACCCCCATATTTCTCTTGAGTTGTCGTCTATATTACACTTG
TGCCCCTGCCTCGGATACTGTTTGCGTTGTTTTGTTTTCCCCCCCCTCAC
CCTTCTTTTTTTCCCTTCGTTATGACTTAATGCTCGTCTTCCTCGTATTT
ATCGGTTTCTTCCCCTGGGTTCCTCCCTGTTCCATTTCCCTTCTTTCCTC
CTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_g15.b1 MSMg01no231_g15.b1 CHROMAT_FILE:
MSMg01no231_g15.b1 PHD_FILE: MSMg01no231_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:42 2005
         (320 letters)



>mm_chr9_45594941_45595660
          Length = 720

 Score =  586 bits (303), Expect = e-172
 Identities = 312/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctggtccttacggtcgctgggaggcagatggtgacctggctgggtggccgtaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattcctggtccttacggtcgctgggaggcagatggtgacctggctgggtggccgtaca 460

                                                                       
Query: 65  aggtgtgcttatgtggcagggtgtgggaggtaggcaggagggaccctgcctgtggtggtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 aggtgtgcttatgtggcagggtgtgggaggtaggcaggagggaccctgcctgtggtggtg 400

                                                                       
Query: 125 tactatgacaggagtgtgaagtgtcacttggcaggactttgcacatggctctgtgattag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tactatgacaggagtgtgaagtgtcacttggcaggactttgcacatggctctgtgattag 340

                                                                       
Query: 185 tccagggcttctgtcctccttactggattgggtcgattaagctgtgtatatgtggctgtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tccagggcttctgtcctccttactggattgggtcgattaagctgtgtatatgtggctgtg 280

                                                                       
Query: 245 agccagggctgaagtggccgcgttggaggtctagagagctttgttctaagtgctgaagct 304
           ||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||
Sbjct: 279 agccagggctgaagtggccgcattggaggtctagagagccatgttctaagtgctgaagct 220

                          
Query: 305 cagtggtctgagctg 319
           |||||||||||||||
Sbjct: 219 cagtggtctgagctg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no231_g15.g1 MSMg01no231_g15.g1 CHROMAT_FILE:
MSMg01no231_g15.g1 PHD_FILE: MSMg01no231_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:42 2005
         (252 letters)



>mm_chr9_45431919_45432570
          Length = 652

 Score =  433 bits (224), Expect = e-126
 Identities = 245/252 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatgtgtttctattttcttagttccccgaggatcccttaatgttgcttgggcccggtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||
Sbjct: 201 aaatgtgtttctattttcttagttccccgaggatcccttaatgttgcttggggagggtag 260

                                                                       
Query: 61  aggtggaaagggcggggagtaagggaagctccacaaagcacacttggcctgtggccatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtggaaagggcggggagtaagggaagctccacaaagcacacttggcctgtggccatgt 320

                                                                       
Query: 121 ggagatgcaccctgtagcgatgttcagggaattggggaagcatctcaaaaccccaaaatg 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagatgcaccctgtagcgatgctcagggaattggggaagcatctcaaaaccccaaaatg 380

                                                                       
Query: 181 tcagagctcctgtcctttgtctagaagctgtatacctattaagatgcagattcctggaga 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagagctcctatcctttgtctagaagctgtatacctattaagatgcagattcctggaga 440

                       
Query: 241 agacttttccaa 252
           || | |||||||
Sbjct: 441 aggcctttccaa 452


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)