Query= MSMg01no231_l07.b1 MSMg01no231_l07.b1 CHROMAT_FILE:
MSMg01no231_l07.b1 PHD_FILE: MSMg01no231_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:03 2005
(321 letters)
>mm_chr9_43278060_43278780
Length = 721
Score = 532 bits (275), Expect = e-155
Identities = 310/329 (94%), Gaps = 12/329 (3%)
Strand = Plus / Plus
Query: 5 gaattcaaatgcacagcttctaggagaagttctgctctctctcacactgctggttgagaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gaattcaaatgcacagcttctaggagaagttctgctctctctcacactgctggttgagaa 252
Query: 65 gtggctctcagctacccaaggtgcagaacagctaggagggactagggtaagaaggaggag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gtggctctcagctacccaaggtgcagaacagctaggagggactagggtaagaaggaggag 312
Query: 125 agaggatgctttgtcttccttctct------------gtctctcgctctgccttcaaccg 172
||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct: 313 agaggatgctttgtcttccttctctccctccttctctgtctctcgctctgccttcaactg 372
Query: 173 aggaatttgctgatctctctccagactgtacaagccctgtgtcatggctggggacggttg 232
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gggaacctgctgatctctctccagactgtacaagccctgtgtcatggctggggacggttg 432
Query: 233 tcctcagggtatggccaccagaggatgggtcctgttctttcatagacactggattcagga 292
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 433 tcctcagggtatggccaccggaggatgggtcctgttctttcagagacactggattcagga 492
Query: 293 taagtaagagtggccattaaaacacatga 321
||||||||||||||||| |||||||||||
Sbjct: 493 taagtaagagtggccatcaaaacacatga 521
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space: 222144
Effective search space used: 222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no231_l07.g1 MSMg01no231_l07.g1 CHROMAT_FILE:
MSMg01no231_l07.g1 PHD_FILE: MSMg01no231_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:03 2005
(290 letters)
>mm_chr9_43319025_43319714
Length = 690
Score = 530 bits (274), Expect = e-155
Identities = 286/290 (98%)
Strand = Plus / Minus
Query: 1 atgttatccttcttgaggagcagggcatcggggactctgtctagggtgagctaaggccag 60
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 490 atgttatccttcttgaggagcagggtatcggggactctgtctagggtgagttaaggccag 431
Query: 61 agtatggtttttgtctcttcttcggggtctggcttggaaggaggcccatgtgggatttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 agtatggtttttgtctcttcttcggggtctggcttggaaggaggcccatgtgggatttgg 371
Query: 121 ggaaatatgactaagatcagcgtccagcatcatgttcccgtgcccactctacttttaacg 180
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 370 ggaaatatgactaagatcagcatccagcatcatgttcccgtgcccactccacttttaacg 311
Query: 181 tttggggtattgacagagcatactttggaaattctgccagggggagacatagcactcgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tttggggtattgacagagcatactttggaaattctgccagggggagacatagcactcgag 251
Query: 241 gggctggttcaaaaataggctctggtgctccccagccaatatgttgtctg 290
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gggctggttcaaaaataggctctggtgctccccagccaatatgttgtctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
