Query= MSMg01no231_n08.b1 MSMg01no231_n08.b1 CHROMAT_FILE:
MSMg01no231_n08.b1 PHD_FILE: MSMg01no231_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:12 2005
(632 letters)
>mm_chr9_22920175_22921206
Length = 1032
Score = 1067 bits (552), Expect = 0.0
Identities = 616/652 (94%), Gaps = 28/652 (4%)
Strand = Plus / Plus
Query: 5 gaattctgtccttggggctggagagatggctcagcggttaagagc------------tcc 52
|||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 185 gaattctggccttggggctggagagatggctcagcggttaagagcattgactgctcttcc 244
Query: 53 agaggtcctgagttcaattcccagcaaccacattgtggctcacaaccatctgtaatagaa 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 agaggtcctgagttcaattcccagcaaccacattgtggctcacaaccatctgtaatagaa 304
Query: 113 ttcagtgccctcttctggtgtgtctgtaaacatctacagtgtactcatatgat----taa 168
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 305 ttcagtgccctcttctggtgtgtctgtaaacatctacagtgtactcatataattaaataa 364
Query: 169 acaaacaaacaaac----agata---a-acaaacaaacaaataaacaaaccattctggcc 220
|||||||||||||| ||||| | | |||||||| ||||||||||||||| ||
Sbjct: 365 acaaacaaacaaacaaatagatagcgagataaacaaac----aaacaaaccattctgtcc 420
Query: 221 tgcttcctaaaaggaatgagacagaaatatttttacaacgtggaggggacaaagagtgga 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgcttcctaaaaggaatgagacagaaatatttttacaacgtggaggggacaaagagtgga 480
Query: 281 gcatcagaggagaaagatcattttcctgggcttttatgcttctggttccctgcgatgaaa 340
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 481 gcatcagaggagacagatcattttcctgggcttttatgcttctggttccttgcgatgaaa 540
Query: 341 ctgcttttacagcagccttttgggttctcctgtctttgtagaaggcagagaaggtgcaga 400
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 541 ctgcttttacagcagccttttggattctcctgtctttgtagaaggcagggaaggtgcaga 600
Query: 401 attgcaagttttaggctgatggtaacaagctggtaacctatcaaagcccacagtcttctg 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 attgcaagttttaggctgatggtaacaagctggtaacctatcaaagcccacagtcttctg 660
Query: 461 catcacgaagcagaggaccagggtctgttggatttcttcaaaggttgcatttgagctttg 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 catcacgaagcagaggaccagggtctgttggatttcttcaaaggttgcatttgagctttg 720
Query: 521 tcagctggctgggctgtggtttgttctgtgttcatgtcccttatcagccacccatggtgg 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tcagctggctgggctgtggtttgttctgtgttcatgtcccttatcagccacccatggtgg 780
Query: 581 gcacatgtttctctcctcactgaatggcaggacttcaggacttcctgttgac 632
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gcacatgtttctctcctcactgaatggcaggacttcaggacttcctgttgac 832
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space: 635684
Effective search space used: 635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no231_n08.g1 MSMg01no231_n08.g1 CHROMAT_FILE:
MSMg01no231_n08.g1 PHD_FILE: MSMg01no231_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:12 2005
(600 letters)
>mm_chr9_22934437_22935436
Length = 1000
Score = 1145 bits (592), Expect = 0.0
Identities = 598/600 (99%)
Strand = Plus / Minus
Query: 1 ttaagtctgcaaccgccatttgctgtgtactttgcagactccctaagcactgagacacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ttaagtctgcaaccgccatttgctgtgtactttgcagactccctaagcactgagacacag 741
Query: 61 tgagtaccgagtcagtgggaggtggccaggctgtatttaggtttatcttggaaacaatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tgagtaccgagtcagtgggaggtggccaggctgtatttaggtttatcttggaaacaatgc 681
Query: 121 aggaaactttaggaacaattgatcctgaaggcacacgtctttgtgtaaagagatgaactg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aggaaactttaggaacaattgatcctgaaggcacacgtctttgtgtaaagagatgaactg 621
Query: 181 gagaggtaccagagaccaaagacaaccatgaatacccataaaagtttctggccaagccaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gagaggtaccagagaccaaagacaaccatgaatacccataaaagtttctggccaagccaa 561
Query: 241 aattgttggaataagagaggaggctcctaagagaagctgaggttcatggcttatttacca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aattgttggaataagagaggaggctcctaagagaagctgaggttcatggcttatttacca 501
Query: 301 gggacaagccactgtctgaaacacaagagggagagtcagcttgacttccaataagtgaca 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gggagaagccactgtctgaaacacaagagggagagtcagcttgacttccaataagtgaca 441
Query: 361 taaacaatatgtcattgtttctaagagaaaaagtaaagaaggtcacacattagaagattc 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 440 taaacaatatgtcattgtttctaatagaaaaagtaaagaaggtcacacattagaagattc 381
Query: 421 ccgagggtaaagaccacagcaaacagaacatggcacacaagtggctctaggtagaaaact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccgagggtaaagaccacagcaaacagaacatggcacacaagtggctctaggtagaaaact 321
Query: 481 gcctttggcgtaaataagtgggagttctgacagtgttcagaatgccaaaaatttagaaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gcctttggcgtaaataagtgggagttctgacagtgttcagaatgccaaaaatttagaaag 261
Query: 541 gtgtcttgatgctcgatgaacagtacatttacaggacagaagggaaattgagtcaggcga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gtgtcttgatgctcgatgaacagtacatttacaggacagaagggaaattgagtcaggcga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
