BAC Information

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BAC

Clone NameMSMg01-232B10
Chromosome9 (Build37)
Map Location 85,184,916 - 85,385,468
singlet/doubletdoublet
Overlap geneBC023892
Upstream geneEG666669, LOC666672
Downstream geneIbtk, 4933431K14Rik, EG434426, 9330154J02Rik, Tpbg, 2610018I03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232B10.T7 (MSMg01no232_b10.b1)MSMg01-232B10.TJ (MSMg01no232_b10.g1)
ACCAG398710AG398711
length736735
length of high quality
(start - end)
281 (43 - 323)288 (76 - 363)
definitionCHROMAT_FILE: MSMg01no232_b10.b1 PHD_FILE: MSMg01no232_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:30 2005CHROMAT_FILE: MSMg01no232_b10.g1 PHD_FILE: MSMg01no232_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,184,916 - 85,185,192)(85,385,184 - 85,385,468)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATAAAATTCCCTTGAAAACAAGAAAGGAAGTCTCCTTGCTTAAAGTCA
ATGTGGAAAAGGCATTAGATACCGACATAATCTAACCTGAAGCCTGATAT
CTTTACCCTATTATTAATGTGGAAATAGTGACTTAAGAGGGCAAAGCAAT
TGCATAAGAGCCGTTGTCCACTTGTAAAATACTAGAAACTAAGCATCAAA
AAGAAGCATTAAAAATAAGAAAATAGTATTGGCACCACTAAAGACATGGC
CTTTATATAATCATTCTTTATATATGTTGAAGAGGCCCTGCTATGAAACA
AGCAGCAAAGGTTTTTATATTTGCCCCCCCCCAGGATAAAATTGTCACAA
AATTTAAGAAACGTTTACCCCCCCCATGAAAGTCTGACCATGAAATATGT
GGCATGAATTCTTGTACATGGCATGAAGAAAGCGTACGTGAAAAGGTGAT
TATTATCTCAGTAATTTGCATTTTGATTCTACAACTCTCAAGAATTTAGT
GACAATTACTTTTAAACCTTATTAAAAGAATCTGAACGCCTCATAAGAAA
TATTGGTCACAGAGGAATACAAGTGTCCAAGGATAACTGATTGTTGCCTA
TTTATCCTATTCACGAGCTTCCCCTTTTGCAAAAAATAATACTATAAAAC
CTCCGTTTTTACATGACCTTATTACCAATCTCATAA
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXGTGACATCAAAGACATGTTCTTTGA
ACAAAACTGCCTTCACGTGACCTGAACGCTAAAGAGATGGATTACAGCTG
CCACCATCCCCTTCCTAGGTACAGAAGGAAAGAGACAGACAAACAGAAAC
AGGGGGATTATTATAAAGATTGGACCATGTAATTGTGGAGAATGACAGAT
CCAAAATCTATTAGATGGGTCTGGCACACCAGAGACCCAGGGAAGAGTTG
CACCCTGGAAAGACACCCTGAAAGAAAACCTTTTTCATCCTCAGTTCTTT
TTTGTTGAGATCTCTTTCTGACCCCACCACACTCAAATGGAAGTTAACCT
GCAGTATTGAAATATCCCCCCGACAAAGTCTCACTGTTATTTAAAACATT
GCCTTTCCAGAATCAGGCTTGCGCAAATATCTCATTACCATGGCTTAGCC
AAACGTATATACATTCCTATATATTCCTTTTCACACCGTGAGATTAGGAA
TTGTCTGATGATGGCTTTTGCCCAACCCATCTGATGTCCCACCGATTCAC
AGTTAAGATGTTTCCAAGCGCCCTTTGCTGGATCTCTCCCCCTCTGCCTT
GTTTCTGCCTCTTCCTTCTACGAGAAATACCCCCCCCCAGCACTCTTTAC
TTCCTTTATTTTAGACACATAGACGCCCCACCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_b10.b1 MSMg01no232_b10.b1 CHROMAT_FILE:
MSMg01no232_b10.b1 PHD_FILE: MSMg01no232_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:30 2005
         (281 letters)



>mm_chr9_85184713_85185393
          Length = 681

 Score =  520 bits (269), Expect = e-152
 Identities = 275/277 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcataaaattcccttgaaaacaagaaaggaagtctccttgcttaaagtcaatgtg 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcataaaattcccatgaaaacaagaaaggaagtctccttgcttaaagtcaatgtg 263

                                                                       
Query: 64  gaaaaggcattagataccgacataatctaacctgaagcctgatatctttaccctattatt 123
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaaaaggcattagatactgacataatctaacctgaagcctgatatctttaccctattatt 323

                                                                       
Query: 124 aatgtggaaatagtgacttaagagggcaaagcaattgcataagagccgttgtccacttgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aatgtggaaatagtgacttaagagggcaaagcaattgcataagagccgttgtccacttgt 383

                                                                       
Query: 184 aaaatactagaaactaagcatcaaaaagaagcattaaaaataagaaaatagtattggcac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaaatactagaaactaagcatcaaaaagaagcattaaaaataagaaaatagtattggcac 443

                                                
Query: 244 cactaaagacatggcctttatataatcattctttata 280
           |||||||||||||||||||||||||||||||||||||
Sbjct: 444 cactaaagacatggcctttatataatcattctttata 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no232_b10.g1 MSMg01no232_b10.g1 CHROMAT_FILE:
MSMg01no232_b10.g1 PHD_FILE: MSMg01no232_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:30 2005
         (288 letters)



>mm_chr9_85385144_85385831
          Length = 688

 Score =  520 bits (269), Expect = e-152
 Identities = 281/285 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgacatcaaagacatgttctttgaacaaaactgccttcacgtgacctgaacgctaaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 325 gtgacatcaaagacatgttctttgaacaaaactgccttcacgtgatctgaacgctaaaga 266

                                                                       
Query: 61  gatggattacagctgccaccatccccttcctaggtacagaaggaaagagacagacaaaca 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatggcttacagctgccaccatccccttcctaggtacagaaggaaagagacagacaaaca 206

                                                                       
Query: 121 gaaacagggggattattataaagattggaccatgtaattgtggagaatgacagatccaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaaacagggggattattataaagattggaccatgtaattgtggagaatgacagatccaaa 146

                                                                       
Query: 181 atctattagatgggtctggcacaccagagacccagggaagagttgcaccctggaaagaca 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 atctataagatgggtctggcacaccagagacccagggaagagttgcaccctggaaagaca 86

                                                        
Query: 241 ccctgaaagaaaacctttttcatcctcagttcttttttgttgaga 285
           ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 85  ccctgaaagaagacctttttcatcctcagttcttttttgttgaga 41


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)