Query= MSMg01no232_b22.b1 MSMg01no232_b22.b1 CHROMAT_FILE:
MSMg01no232_b22.b1 PHD_FILE: MSMg01no232_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:32 2005
(300 letters)
>mm_chr9_98809378_98810077
Length = 700
Score = 447 bits (231), Expect = e-130
Identities = 277/295 (93%), Gaps = 8/295 (2%)
Strand = Plus / Minus
Query: 5 gaattcatattggctcctttttattttaactttttgagagaagagaacccagagttcagg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gaattcatattggctcctttttattttaactttttgagagaagagaacccagagttcagg 330
Query: 65 ctacactggcttca--ctggtgtgtttgtgtttggggtctttgtatgtgattgtatgcac 122
||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 329 ctacactggct--atgctggtgtgtttgtgtttggggactttgtatgtgattgtatgcac 272
Query: 123 taggaggtctgaagagggctctggatccccaggagctgggatagcaggcagttcttgaag 182
| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 271 ttggaggcctgaagagggctctggatccccaggagctgggatagtaggcagttcttgaag 212
Query: 183 agcccttgagagcacccagctataccactcttagcatctatccagaagatgttctaacat 242
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 agcccttcagagcacccagctataccactcttagcatctatccagaagatgttctaacat 152
Query: 243 gcaataaaaacacatggcc--cactatgttcattgatgcagtctcatttataata 295
| ||||| | |||| || |||||||||||||||||||| |||||||||||||
Sbjct: 151 gtaataaggatacat--cctccactatgttcattgatgcagcctcatttataata 99
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space: 201081
Effective search space used: 201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no232_b22.g1 MSMg01no232_b22.g1 CHROMAT_FILE:
MSMg01no232_b22.g1 PHD_FILE: MSMg01no232_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:32 2005
(292 letters)
>mm_chr9_98716012_98716703
Length = 692
Score = 472 bits (244), Expect = e-137
Identities = 280/292 (95%), Gaps = 1/292 (0%)
Strand = Plus / Plus
Query: 1 attgttttt-aatagctgagtagtactccattgtgtaaatgtatcttaaaggcctcttta 59
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 200 attgttttttaatagctgagtagtactccattgtgtaaatgtatcttaaaggactcttta 259
Query: 60 gaaggagatcctgtcagaaatgtggccataggctgtgcctggatgcagaggttcgttgag 119
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 260 gaaggagatcctgtcagagatgtggccataggctgtgcctggatgcagaagttcggtgag 319
Query: 120 tgtaaagacagagttgagcaggctgaccctaaaggctatgaaggaagcctaaaagctgcc 179
||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 320 tgtaaaggcagagttgggcaggctgaccctaaaggctatgagggaagcctaaaagctgcc 379
Query: 180 agggacccggctaagtagtgagacgtggaagcatgcgtgcttttgcagaaaatggtttgc 239
||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 380 agggaccaggctaagcagtgagacatggaagcatgcgtgcttttgcagaaaatggtttgc 439
Query: 240 tctctaaaagatctgcatttgaccttgaactaagagggctgagcttggggtg 291
|||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 440 tctctaaaagatctgcatttgaccttgaactaagagggcttagcttggggtg 491
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
