BAC Information

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BAC

Clone NameMSMg01-232G15
Chromosome9 (Build37)
Map Location 19,164,887 - 19,165,169
singlet/doubletsinglet
Overlap geneOlfr846
Upstream geneNaalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1, Muc16, Olfr24, Olfr828, Olfr829, Olfr830, Olfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726, Olfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1
Downstream geneLOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232G15.T7 (MSMg01no232_g15.b1)MSMg01-232G15.TJ (MSMg01no232_g15.g1)
ACCAG398933AG398934
length723732
length of high quality
(start - end)
313 (45 - 357)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no232_g15.b1 PHD_FILE: MSMg01no232_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:54 2005CHROMAT_FILE: MSMg01no232_g15.g1 PHD_FILE: MSMg01no232_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:54 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTTGGAATTTTGGAATATTGATGGAGATACCATGAATTTTATAGA
TTGCTTTTGGTAGGGTGGCAATTTTTACTGTTAATCCTACCAATCTATGG
TCATGGGAGATTTTTACATATTCTGAAGTATTCTTTAGTTTCTTTCTTGA
AAGAAATTAAGTTCTTGTCATACAAATCTTTGACATGTTTGGTTAGAGTT
ACCCAAGATATTTGATAATATTTGTTTCTATTGTGAATGATTTTGTTTCC
CAAATTTCTTTTTCTCCCACTTATCATTTGTATAAAGGAAGTCTACCTAT
TGGTTTGAGTTAATTTTATATCCACTTATTTGCTTTTTAACTGTAAAAGA
TCTCTGGTTGAACCCTTGTGGTTGCTTATCTAAACCATCTCCTCATCTGC
AAATAGTGATAACTTATTTGACTTATTCTTTGCCACATTGTATCCCTTTT
GATCTCCTTTTGTGGTCTTATTGTTCTACCTAGAACTTTGAGTATACATT
GAACAGAAAAAGGGGAGAGTAGGCATCCTTGTCTTCTCCCTGATTTAAGT
GGGATTGCTTCAAGTATCTTTCCTACTAAGTTAATATTGGCTTTTGGTTT
GCTGTGTATTGCTTTTATCATATTTAGGCATGGCCCTTGAATTCCTGACC
TCTCCTATACTTTTCATATGTAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAATCTTTGGAATCATTTTCTCTT
ATACTCGAATTGTCTCTTCTATTTTGAAAATATCTTCCCTTAGAGGAAAG
TACAAAGCCTTTTCTACTTGTGGGTCTCACCTTTCAGTTGTCTCGTTATT
TTATGGTGCAGGAGTTGGAGTTTATATTAGCTCTTCAATTGCTGTTTTCC
CTCAGACAACTACAGTGTCATATATTATGTACACAGTGCTCCCTCAAATG
TTGAACCCTTTTATCTATAGCTTAAGGAATAAAGATATGAAAGAAGCCTT
ACGAAAGCTCATTGCTAAGGAACCAAGACTTCCCTGATATTTTTAAGTAG
TTGGGACTTGAACTACCCATGTGTTTCATAGAGACAGAATTCCTGGTGAG
TAAGAATGTCTGTTTTGTTCTTGTCTTCTATATATCATATTAACCAGAAA
TCTCTAAATATATTATGTGATTTATTAGTTATTTGTTTTTCTGTAATATA
ATGATTTCTTATCATATTTCACCATATATTTTTTATATGCCATACAATCA
GAACCAACTAAAAACTTACAAATTTATTAATTTCAATATGTATACAATTC
TCGATTAGTAAACACTTTACGAAACTTACTCCATACCTACCTACCTATAT
ATGCTCTTATTACTATATATTACTACAAAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_g15.g1 MSMg01no232_g15.g1 CHROMAT_FILE:
MSMg01no232_g15.g1 PHD_FILE: MSMg01no232_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:54 2005
         (283 letters)



>mm_chr9_19164687_19165369
          Length = 683

 Score =  547 bits (283), Expect = e-160
 Identities = 283/283 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatctttggaatcattttctcttatactcgaattgtctcttctattttgaaaatatctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 caatctttggaatcattttctcttatactcgaattgtctcttctattttgaaaatatctt 424

                                                                       
Query: 61  cccttagaggaaagtacaaagccttttctacttgtgggtctcacctttcagttgtctcgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 cccttagaggaaagtacaaagccttttctacttgtgggtctcacctttcagttgtctcgt 364

                                                                       
Query: 121 tattttatggtgcaggagttggagtttatattagctcttcaattgctgttttccctcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tattttatggtgcaggagttggagtttatattagctcttcaattgctgttttccctcaga 304

                                                                       
Query: 181 caactacagtgtcatatattatgtacacagtgctccctcaaatgttgaacccttttatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 caactacagtgtcatatattatgtacacagtgctccctcaaatgttgaacccttttatct 244

                                                      
Query: 241 atagcttaaggaataaagatatgaaagaagccttacgaaagct 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 atagcttaaggaataaagatatgaaagaagccttacgaaagct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)