Query= MSMg01no232_j16.b1 MSMg01no232_j16.b1 CHROMAT_FILE:
MSMg01no232_j16.b1 PHD_FILE: MSMg01no232_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:08 2005
(319 letters)
>mm_chr9_33874714_33875433
Length = 720
Score = 530 bits (274), Expect = e-155
Identities = 304/316 (96%), Gaps = 7/316 (2%)
Strand = Plus / Plus
Query: 5 gaattcttaatcttgac-ccaaaagcaccatttgtcaaaggaaagcctgatcgagtgcac 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttaatcttgacaccaaaagcaccatttgtcaaaggaaagcctgatcgagtgcac 264
Query: 64 ctcatctaaaccaaagtttcaaaggctccttttagaagacaaagtggatactattgcaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcatctaaaccaaagtttcaaaggctccttttagaagacaaagtggatactattgcaaa 324
Query: 124 ataacttcaatacaaatatccaacagaggaatggtgtctagaatatataaagaaagaaca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 325 ataacttcaatacaaatatccaacagaggaatggtgtctagaatatataaagaaagacca 384
Query: 184 aaacttaattctccctcttctcccaggcccctgcctctctcatctctttaaacacacaca 243
||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaactcaattctcccttttctcacaggcccctgcctctctcatctctttaaacacacaca 444
Query: 244 cacacacacacacacacacacacacacacacacacattcttacacacacatacatattga 303
|||||||||||||||||||||||||||||||||||| | ||||||||| |||| |||
Sbjct: 445 cacacacacacacacacacacacacacacacacaca--c--acacacacacacat--tga 498
Query: 304 gcaaaagacagaaaga 319
||||||||||||||||
Sbjct: 499 gcaaaagacagaaaga 514
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 720
Length adjustment: 9
Effective length of query: 310
Effective length of database: 711
Effective search space: 220410
Effective search space used: 220410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no232_j16.g1 MSMg01no232_j16.g1 CHROMAT_FILE:
MSMg01no232_j16.g1 PHD_FILE: MSMg01no232_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:08 2005
(284 letters)
>mm_chr9_34002820_34003504
Length = 685
Score = 331 bits (171), Expect = 3e-95
Identities = 268/345 (77%), Gaps = 71/345 (20%)
Strand = Plus / Minus
Query: 1 tttgtaagttcttccatggcattttgttagtggccattattgctata-gccttatattct 59
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 342 tttgtaagttcttccatggcattttgttagtggccattattgctataggatttatattct 283
Query: 60 ttgagaagacatgttattttgatttcttatgctgtatttattctgtattagaatgttcat 119
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 282 ttgagaagacatgttattttgatttcttatgctatatttactctgtattagaatgttcat 223
Query: 120 gttaacagttttttggttaaa------------------tttttctttttctttttcttt 161
||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 222 gttaacagttttttggttaaatttttctttttctttttctttttctttttctttttcttt 163
Query: 162 tttccttttcc------------------------------------------ttttctt 179
||||||||||| |||||||
Sbjct: 162 tttccttttccttttctttttctttttctttttctttttctttttctttttctttttctt 103
Query: 180 tttctttttctttgcttcgtcttcgtcctctctctctctctctctctctctctctctctc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttctttttctttgcttcgtcttcgtcctctctctctctctctctctctctctctctctc 43
Query: 240 tctctctctctctttctctctcattgttgcacaaaccatttttct 284
|||| ||||||||||||||| ||||||||||||||
Sbjct: 42 tctc----------tctctctcattgttgttcaaaccatttttct 8
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 685
Length adjustment: 9
Effective length of query: 275
Effective length of database: 676
Effective search space: 185900
Effective search space used: 185900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
