BAC Information

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BAC

Clone NameMSMg01-233A15
Chromosome9 (Build37)
Map Location 117,353,888 - 117,480,239
singlet/doubletdoublet
Overlap genenone
Upstream geneRbms3
Downstream geneLOC665840, LOC100039650, LOC100039681, Azi2, 2010110K16Rik, Eomes, Golga4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233A15.T7 (MSMg01no233_a15.b1)MSMg01-233A15.TJ (MSMg01no233_a15.g1)
ACCAG399364AG399365
length740732
length of high quality
(start - end)		239 (126 - 364)568 (85 - 652)
definitionCHROMAT_FILE: MSMg01no233_a15.b1 PHD_FILE: MSMg01no233_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:40 2005CHROMAT_FILE: MSMg01no233_a15.g1 PHD_FILE: MSMg01no233_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,353,888 - 117,354,123)(117,479,672 - 117,480,239)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAACAAGGGCTGTATGATTTCTAACTTTCCAGGAATAAAATGAGC
ACCATGCCTGCATGTCCCTACTCCATCATTAGGCTTTAAAAGATTCACCC
GTGCAAAACATAGGAAGTTGGTTAAATGAAGAGCTAGTCTGGGGCAGGAA
AACAACAGAGAGGAGAAAACAGTCATTTTCCTTCAGAGCTGAAATTGCAC
GGAGGATAATTTCCCTCCGGTGGCATTCTGCAAAGGGGAAATTTTATCTC
AAGCATTTTATCGCAGATGATTTGGTTTAAGTAAGAGCAATTTCATCCAT
GGGACTCCTAATACTATTGTTGTCCCTGCCCGCCCTGTACCTGTGCAGGA
TGCTCAGGTGACTCAACCAGGATCTTGGAGTATGTAACTGTTTCATGATA
CCATACATTTATATAAAGAATTTCAGTCATTTCTCCCCTGTTCCCTTCCA
TCATCCATGTCCCTTCCCTGTTTCTGATCAGCAAGTCCCTTCCTTCTTTC
TTCTCTTTGTTATGTGTGTGCCTCACTGCGTTTCGTCAGTTCCTTGTGTG
AGTGTGGTTGTGTGGGTGGAGAGTTCCTTANTGAATNTTAAGAAACTTAT
CCCTGGTTATGCTTCTGTATAAAGTTCCCTCCCTTCCTTACTACTTTCTT
TATCTGCCCATCTTTCTGTTGTATACCGCCTGTCCTTATG

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGACTTGGGAGCATAC
AGCACATATGCACACTAAATAGGTTAGTTTCTGTGGGGTGAATTTGTAGA
GATGGCCAGCAAAACTACTTTTTAAAATGCTTTTATGTTTTCATTTAAAA
GCATGTCTGGCTAGAAATACACAATGGCTTGTTTCTCTCAAGCCATCCAT
CTGTATATGAAAATTATGCATGTTTAGTTGAGGATATAGTAGAAGACTAT
ATCCTAGGACATGCTAGAATAAAGGACACTGAGGGGAAAACATCACAAGG
AGATGAAAAAGTTGTCAGGGTTTCCACAGGTTCCACAAAGCTGAACAACC
AAGTAGCACCTAAAAAGGAGAACATACATTGTGGGTTTGGAAAACACAAC
GCTGCGTGTGTTTATACTGTGCAAAGTAAGATGAGGAGGGAGAATAGAGA
GAGACCTATTCTTGGCAGTGCATTGGCTAAGAGCATGGGAAAAATTCCTT
GTGGAAAGCTGAAGCAAAACAGATGGGCTATTAGATTATCAGTACATGGC
CCTAAACCAAGGAAAAGACCCTATCTTGNAAGAATTTACATTGAAGGCCT
GGTGGGAGGGCTCAGGATATGAGCACACAAATCTAAGATTGAGCCGCAGA
GTGCACATAATATCCCCAGTGTGGCGGTATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_a15.b1 MSMg01no233_a15.b1 CHROMAT_FILE:
MSMg01no233_a15.b1 PHD_FILE: MSMg01no233_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:40 2005
         (239 letters)



>mm_chr9_117353688_117354326
          Length = 639

 Score =  449 bits (232), Expect = e-131
 Identities = 235/236 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcattaggctttaaaagattcacccgtgcaaaacataggaagttggttaaatgaagagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcattaggctttaaaagattcacccgtgcaaaacataggaagttggttaaatgaagagct 260

                                                                       
Query: 61  agtctggggcaggaaaacaacagagaggagaaaacagtcattttccttcagagctgaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtctggggcaggaaaacaacagagaggagaaaacagtcattttccttcagagctgaaat 320

                                                                       
Query: 121 tgcacggaggataatttccctccggtggcattctgcaaaggggaaattttatctcaagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcacggaggataatttccctccggtggcattctgcaaaggggaaattttatctcaagca 380

                                                                   
Query: 181 ttttatcgcagatgatttggtttaagtaagagcaatttcatccatgggactcctaa 236
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 ttttatcgcagatgatttggtttaagtaagagcgatttcatccatgggactcctaa 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no233_a15.g1 MSMg01no233_a15.g1 CHROMAT_FILE:
MSMg01no233_a15.g1 PHD_FILE: MSMg01no233_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:40 2005
         (568 letters)



>mm_chr9_117479472_117480439
          Length = 968

 Score = 1038 bits (537), Expect = 0.0
 Identities = 560/568 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agacttgggagcatacagcacatatgcacactaaataggttagtttctgtggggtgaatt 60
           ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 768 agacttgagagcatacagcacatatgcacactaaataagttagtttctgtggggtgaatt 709

                                                                       
Query: 61  tgtagagatggccagcaaaactactttttaaaatgcttttatgttttcatttaaaagcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tgtagagatggccagcaaaactactttttaaaatgcttttatgttttcatttaaaagcat 649

                                                                       
Query: 121 gtctggctagaaatacacaatggcttgtttctctcaagccatccatctgtatatgaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gtctggctagaaatacacaatggcttgtttctctcaagccatccatctgtatatgaaaat 589

                                                                       
Query: 181 tatgcatgtttagttgaggatatagtagaagactatatcctaggacatgctagaataaag 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 588 tatgcatgtttagttgaggatatagtagaagacaatatcctaggacatgctagaataaag 529

                                                                       
Query: 241 gacactgaggggaaaacatcacaaggagatgaaaaagttgtcagggtttccacaggttcc 300
           ||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 528 gacaccgaggggaaaacatcacaaggaaaggaaaaagttgtcagggtttccacaggttcc 469

                                                                       
Query: 301 acaaagctgaacaaccaagtagcacctaaaaaggagaacatacattgtgggtttggaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 acaaagctgaacaaccaagtagcacctaaaaaggagaacatacattgtgggtttggaaaa 409

                                                                       
Query: 361 cacaacgctgcgtgtgtttatactgtgcaaagtaagatgaggagggagaatagagagaga 420
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gacaacgctgcgtgtgtttatactgtgcaaagtaagatgaggagggagaatagagagaga 349

                                                                       
Query: 421 cctattcttggcagtgcattggctaagagcatgggaaaaattccttgtggaaagctgaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 cctattcttggcagtgcattggctaagagcatgggaaaaattccttgtggaaagctgaag 289

                                                                       
Query: 481 caaaacagatgggctattagattatcagtacatggccctaaaccaaggaaaagaccctat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 caaaacagatgggctattagattatcagtacatggccctaaaccaaggaaaagaccctat 229

                                       
Query: 541 cttgnaagaatttacattgaaggcctgg 568
           |||| |||||||||||||||||||||||
Sbjct: 228 cttggaagaatttacattgaaggcctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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