BAC Information

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BAC

Clone NameMSMg01-234K17
Chromosome9 (Build37)
Map Location 55,940,328 - 55,940,562
singlet/doubletsinglet
Overlap genePstpip1
Upstream geneLOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4, AI118078, Etfa, LOC546133, Isl2, Zfp291, LOC664980, 4930563M21Rik, LOC664995, LOC665005, Rcn2
Downstream geneTspan3, C230081A13Rik, Hmg20a, LOC100039535, LOC100039549, LOC640537, Lingo1, Odf3l1, Cspg4, Sh3px3, Imp3, Snupn, Ptpn9, 2700012I20Rik, Sin3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234K17.T7 (MSMg01no234_k17.b1)MSMg01-234K17.TJ (MSMg01no234_k17.g1)
ACCAG400484AG400485
length737766
length of high quality
(start - end)
234 (134 - 367)255 (77 - 331)
definitionCHROMAT_FILE: MSMg01no234_k17.b1 PHD_FILE: MSMg01no234_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:42 2005CHROMAT_FILE: MSMg01no234_k17.g1 PHD_FILE: MSMg01no234_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGGGAACTCAACCTCCGATAGATAGCCAAGTGCACACAGAAGCAA
ACAGAAGACCCTGTCTCATTTTAACCGAAAGGAAGTCTCACCCAGGAGCC
ACCCTCTGATCTACACACACCATGGCACACATCCATGTCCACACTTACAC
AAATCCTTACACACACACATGCTCACACACGCGGCTCTCGGGTATCTCCT
ATAAGCATATGAATGAGCTCTGGGGATAGCTCTTAGTAACGGAGTCTTTA
GTTCCAAGACACCTTTGTTTCCCTCCTGCTTATGAACTGATGTTAGAAAT
CTGGCTGGTTCCCACCTGTGTTCAGGATCACACCAAGTTGCCAGATAAAT
GATCTGTTCCATCCAGCTCAGAGGTTTCCTTCTACTATTTAAAAACTAGA
TGTTGGGGCTAGAGAGATGGCTTAACAGTTAAGAACATTAGCTGCTCTTC
CAGAGGACCTGGGTTTAATTCCTCCCATAACGTGGTGGCTCACCACCATC
TGTACCTACAGTTCTAGAGGATATGACGCCCTCTTCTGGCCTCCACAGGC
ATTGCATGCACACAGTGCACAGACACATGCAGGCAAAATACCCAAATACA
TAAAATAAAAATAAATAAAATTTCATTAAAAAAAAGACTGGATATCCTTT
CCTTTTCTTCCTTTCTCCCTAACTACACCCACTGCCT
ACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTATACAGAG
AAACCTTGTCTTGAAAAAAAAGAAAGACAGAGACAAGAAAGAAAGAAAGA
AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA
GAGAGAGAGAGAGAGAGAAAAGAGAGGGAAAGAAAGGAAGAAAGGAGAAA
GAGAAAGAGAGAAAGAAAGAAAGAAGGAAGGTTATATAGAAAGAAAGAAA
GAAAGAAAGAAAGAAAGAATGATTTTTTTTTTCCCCCCCCCCCACCCCAA
TAGAGAGGGAAAGAAAGAAACGAAGTATGAACGAAAGACAGACAATAAAG
AGAGAGAAAGAACAGATCGACATTCTAGTGCCCATGCTGGTGGTGCCAGA
GTGCAGCATGGCTAAGATGGGGCATGTGAGATGGAGAGATGGAAAAAATG
GAGTGTGTAGTGAGAGATGAGAGAGAATGTGAAGTTTTTTTTTTTTCCCT
TTTCCCTTTTCCCCCCCTTCTCCTTTTTTCCCCCCTTCTCCTTCTTTTCT
TTTTCCCCTTTTTTTTTTTTTCCCGTCCCCTTTTTCTTTTCCCCCCCCCA
CCCCTTATTTCTTTTTTTTTTTATTTCCTCTCCCTTTCCCCTTCCCTCTC
TTTTTTATTCTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_k17.b1 MSMg01no234_k17.b1 CHROMAT_FILE:
MSMg01no234_k17.b1 PHD_FILE: MSMg01no234_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:42 2005
         (234 letters)



>mm_chr9_55940029_55940662
          Length = 634

 Score =  439 bits (227), Expect = e-128
 Identities = 233/235 (99%), Gaps = 1/235 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtctcacccaggagccaccctctgatctacacacaccatggcacacatccatgtccaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 agtctcacccaggagccaccctctgatctacacacaccatggcacacatccatgtccaca 475

                                                                       
Query: 61  cttacacaaatccttacacacacacatgctcac-acacgcggctctcgggtatctcctat 119
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 474 cttacacaaatccttacacacacacatgctcacaacacgcggctctcgggtatctcctat 415

                                                                       
Query: 120 aagcatatgaatgagctctggggatagctcttagtaacggagtctttagttccaagacac 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 414 aagcatatgaatgagctctggggatagctcttagtaacggagtctttagttccaggacac 355

                                                                  
Query: 180 ctttgtttccctcctgcttatgaactgatgttagaaatctggctggttcccacct 234
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ctttgtttccctcctgcttatgaactgatgttagaaatctggctggttcccacct 300


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)