Query= MSMg01no235_h07.b1 MSMg01no235_h07.b1 CHROMAT_FILE:
MSMg01no235_h07.b1 PHD_FILE: MSMg01no235_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:47 2005
(574 letters)
>mm_chr9_18919510_18920483
Length = 974
Score = 1011 bits (523), Expect = 0.0
Identities = 560/577 (97%), Gaps = 10/577 (1%)
Strand = Plus / Minus
Query: 5 gaattctaaaactcctttgaagaagtataaaaagagtgcacatctacattttgtcttgtt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 gaattctaaaactcctttgaagaagtataaaaagagtgcacatctacattttgtcttgtt 708
Query: 65 ctgaatttagtggaaatgctttgacactctgtttatgcttatattaccggcaaacatttt 124
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 707 ctgaatttagtggaaatgctttgacactctgtttatgcttatattaccagcaaacatttt 648
Query: 125 aacaagcacttacttatttttagatgtgtcttctgtcttcttaatttcttcatatatttt 184
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 647 aacaagcacttacttatttttagatgtgtcctctgtcttcttaatttcttcatatatttt 588
Query: 185 attttgagcgggtatggaatttttggcattttctacttttctgtgttgtagacagtttat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 attttgagcgggtatggaatttttggcattttctacttttctgtgttgtagacagtttat 528
Query: 245 ttcatggagtatgttcactggtatctggaaaaaggtgacatagaacattattgatggagt 304
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 527 ttcatggagtatgttcactggtatctggaaaaaggggacatagaacattattgatggagt 468
Query: 305 tatatgattgcgtatgatatctacattaatttttttctgtttagcagtttgtttt----- 359
|||||||| || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 467 tatatgatagcatatgatatctacattaatttttttctgtttagcagttttttttgcttt 408
Query: 360 tagatattttcctcaccct--acatttcaaatgctattctgaaagtcccctataccctca 417
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tagatattttcctca---tttacatttcaaatgctattctgaaagtcccctataccctca 351
Query: 418 ccccacctgcttcccaaccaagacacttccacttcttggctttggcattcccctatactg 477
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 350 ccccacctgcttcccaaccaagccacttccacttcttggctttggcattcccctatactg 291
Query: 478 gggcatataatcttcacaagaccaaaggcctctcctcccactgatagacaactaggccat 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gggcatataatcttcacaagaccaaaggcctctcctcccactgatagacaactaggccat 231
Query: 538 cctctgctacatatgcaactagagacacagctctggt 574
|||||||||||||||||||||||||||||||||||||
Sbjct: 230 cctctgctacatatgcaactagagacacagctctggt 194
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no235_h07.g1 MSMg01no235_h07.g1 CHROMAT_FILE:
MSMg01no235_h07.g1 PHD_FILE: MSMg01no235_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:48 2005
(512 letters)
>mm_chr9_18756156_18757066
Length = 911
Score = 922 bits (477), Expect = 0.0
Identities = 505/517 (97%), Gaps = 6/517 (1%)
Strand = Plus / Plus
Query: 1 tcctgatatagagtctgaaaagacactgagaaaaagaataggtaattatacctacaacaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 196 tcctgatatagagtctgaaaagacactgagaaaaagaataggtaattataactacaacaa 255
Query: 61 aactatcatttttgattttcaatatgtgattgccctaagtgtacaatttctcccaatatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aactatcatttttgattttcaatatgtgattgccctaagtgtacaatttctcccaatatc 315
Query: 121 ctgccatactcataagtcttgtatttcatggtcatataaatttcatgaaatctttaatta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ctgccatactcataagtcttgtatttcatggtcatataaatttcatgaaatctttaatta 375
Query: 181 acagcttagttaacattaatt-----aactcattaatcttgaactcattaaagttcaact 235
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 376 acagcttagttaacattaatttaattaactcattaatcttgaacttattaaagttcaact 435
Query: 236 ttaagagattcccttgtgtgttattttcattgttgaacatatgagattcagtaatattgt 295
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ttcagagattcccttgtgtgttattttcattgttgaacatatgagattcagtaatattgt 495
Query: 296 ttggattataaagaatttatttatttttattaatctttcttatattgcaccgacatttta 355
||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||
Sbjct: 496 ttggattataaagaatttatttatttttattaatctttcttatattgaat-gatatttta 554
Query: 356 taagaaagtaaacaatttaatctatgtggcaaaatataaaacaatggctgcatgaaaaca 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 taagaaagtaaacaatttaatctatgtggcaaaatataaaacaatggctgcatgaaaaca 614
Query: 416 aagtctctgtagtatatcatgaagttagcaaaatggttattaataaaaaaataccattgg 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 aagtctctgtagtatatcatgaagttagcaaaatggttattaataaaaaaataccattgg 674
Query: 476 agaaaaatgtgtatatgatgttaagatcatacatatc 512
|||||||||||||||||||||||||||||||||||||
Sbjct: 675 agaaaaatgtgtatatgatgttaagatcatacatatc 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 911
Length adjustment: 10
Effective length of query: 502
Effective length of database: 901
Effective search space: 452302
Effective search space used: 452302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
