Query= MSMg01no236_f04.b1 MSMg01no236_f04.b1 CHROMAT_FILE:
MSMg01no236_f04.b1 PHD_FILE: MSMg01no236_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:52 2005
(324 letters)
>mm_chr9_116676070_116676793
Length = 724
Score = 547 bits (283), Expect = e-160
Identities = 309/319 (96%), Gaps = 4/319 (1%)
Strand = Plus / Minus
Query: 5 gaattcagactccttccctcagcttctgctcagctacacagcccagcctgcctcaggatg 64
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gaattcacactccttccctcagcttctgctcagctacacagcccagcctgcctcaggatg 462
Query: 65 acaccacctgccgtgggccaggttttctctgtatggttttatatataccgctt--aaggc 122
||||||||||||||||| ||||||||||||||||||||||| |||||||||| || |
Sbjct: 461 acaccacctgccgtggggtaggttttctctgtatggttttatgtataccgcttacaa--c 404
Query: 123 tttcactgtaatgagtagaaacaccacgcttatgaccgaaacaatgttttcactcacaga 182
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 403 tttcactgtaatgagtagaaacaccacgcttatgaccggaacaatgttttcactcacaga 344
Query: 183 cctcactgtttgcttatgtaaataggtcagagctattctttaatttcattatcatatggg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 cctcactgtttgcttatgtaaataggtcagagctattctttaatttcattatcatatggg 284
Query: 243 ccactattcattcctaattcgtagtatgacattttatcatcaacaagcctaattagtagt 302
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ccactattcattcttaattcgtagtatgacattttatcatcaacaagcctaattagtagt 224
Query: 303 tcttcttgtttaaaaagta 321
|||||||||||||||||||
Sbjct: 223 tcttcttgtttaaaaagta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space: 225225
Effective search space used: 225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no236_f04.g1 MSMg01no236_f04.g1 CHROMAT_FILE:
MSMg01no236_f04.g1 PHD_FILE: MSMg01no236_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:52 2005
(298 letters)
>mm_chr9_116500263_116500960
Length = 698
Score = 534 bits (276), Expect = e-156
Identities = 291/296 (98%)
Strand = Plus / Plus
Query: 1 ttctgggcgagcatacacaaactgcgctcagacccaacaatccaggtcgtgcaccccctg 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 ttctgggcgagcacacacaaactgcgctcagacccaacaatccaggtcgtgcaagccctg 260
Query: 61 ctcgattcttccattgtccctctccatcttttgtgaaagggtctgtcactgaactccaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcgattcttccattgtccctctccatcttttgtgaaagggtctgtcactgaactccaga 320
Query: 121 ctggctggtcatcagtccccaggggtagcattgactttcctcaaccgcaagggctgcgtt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggctggtcatcagtccccaggggtagcattgactttcctcaaccgcaagggctgcgtt 380
Query: 181 cgcagatgtgcacagccacagctggcttttactttgagcctgggaatcagactcaggatc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcagatgtgcacagccacagctggcttttactttgagcctgggaatcagactcaggatc 440
Query: 241 ctcattattgggtcaggtactttacccaccaagcccaactctcccattctgacttg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcattattgggtcaggtactttacccaccaagcccaactctcccattctgacttg 496
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space: 199121
Effective search space used: 199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
