Query= MSMg01no236_g19.b1 MSMg01no236_g19.b1 CHROMAT_FILE:
MSMg01no236_g19.b1 PHD_FILE: MSMg01no236_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:59 2005
(575 letters)
>mm_chr9_111566650_111567624
Length = 975
Score = 627 bits (324), Expect = 0.0
Identities = 374/391 (95%), Gaps = 2/391 (0%)
Strand = Plus / Minus
Query: 186 tggattgctcagcttgctttcttatagaacccaggactaccagcccagggatggcacccc 245
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 975 tggattgctcagcttgctttcttatagaatccaggactaccagcccagggatggcaccac 916
Query: 246 ccacaatgggcccttcccccttgatcactaattgataaaatgccttagaacct-ggtctc 304
|||||||||||| ||||||||||||| |||||||| |||||||||||||| || ||||||
Sbjct: 915 ccacaatgggcctttcccccttgatccctaattgagaaaatgccttagaa-ctgggtctc 857
Query: 305 atggaagcatttcctcaaggcaggcacctttctctataactccagcgtgtgtcaagtaga 364
||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 856 atgaaagcatttcctcaagggaggctcctttctctataactccagcgtgtgtcaagtaga 797
Query: 365 cacacaaaaccagccagtacaccatggctccactgatgctgaattaattggaattcctta 424
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 catacaaagccagccagtacaccatggctccactgatgctgaattaattggaattcctta 737
Query: 425 ttatcaaaagatccctggnaaaatagcagtgattcacttgttactgggtaacccccagac 484
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 736 ttatcaaaagatccctggtaaaatagcagtgattcacttgttactgggcaacccccagac 677
Query: 485 caccttggctacctcctgtggtggttaatcacaaaaccctgtgatgagacgggaatgatg 544
|||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 676 caccttggttacctcctgtggtggttaatcacagaaccctgtgatgagatgggaatgatg 617
Query: 545 ctttcctagtgccactcagcaattttctgca 575
|||||||||||||||||||||||||||||||
Sbjct: 616 ctttcctagtgccactcagcaattttctgca 586
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no236_g19.g1 MSMg01no236_g19.g1 CHROMAT_FILE:
MSMg01no236_g19.g1 PHD_FILE: MSMg01no236_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:59 2005
(288 letters)
>mm_chr9_111454225_111454912
Length = 688
Score = 522 bits (270), Expect = e-153
Identities = 282/286 (98%)
Strand = Plus / Plus
Query: 1 ccgtgaagggaagaaggccagagaccttccatggtggaagccgcatggacctgacgcaat 60
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 201 ccgtgaagggaagaaggccagagaccttccatggtggaagccgcaaggagctgacgcaat 260
Query: 61 agggatagtgaagagaaaccggaagcactgtcagtcgctctcatgtgaggaacattttga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 agggatagtgaagagaaaccggaagcactgtcagtcgctctcatgtgaggaacgttttga 320
Query: 121 ggttctatgcctgcttcccatttttcatttaaaaagatttatttttcattatgtgtttgt 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggttctgtgcctgcttcccatttttcatttaaaaagatttatttttcattatgtgtttgt 380
Query: 181 gtgtgggaatgtgcacaccagtgctggtcactgtggagccagagacaatggatcgatctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtgggaatgtgcacaccagtgctggtcactgtggagccagagacaatggatcgatctc 440
Query: 241 ttaggagctggagtcacaggaggttgtgaataccctgacacgggtt 286
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaggagctggagtcacaggaggttgtgaataccctgacacgggtt 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
