BAC Information

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BAC

Clone NameMSMg01-237A11
Chromosome9 (Build37)
Map Location 32,149,208 - 32,149,479
singlet/doubletsinglet
Overlap geneKcnj5
Upstream genePrdm10, Nfrkb, Tmem45b, LOC666558, EG666576, Barx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622, Grit
Downstream geneKcnj1, Fli1, LOC669759, LOC100041398, Ets1, LOC100041426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237A11.T7 (MSMg01no237_a11.b1)MSMg01-237A11.TJ (MSMg01no237_a11.g1)
ACCAG402107AG402108
length735791
length of high quality
(start - end)
---287 (129 - 415)
definitionCHROMAT_FILE: MSMg01no237_a11.b1 PHD_FILE: MSMg01no237_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:44 2005CHROMAT_FILE: MSMg01no237_a11.g1 PHD_FILE: MSMg01no237_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCCTATTCGGAGCGAGCCGCGGAATTCCTCTGTTTCAGAGACATCATT
TCAGAGGCAATCTTCCATACCCTCAGTGATGAGGTCTCTAGAGCCCCCAT
TATTATCATCATTATTATTATCACCATTATCATCATTATTATTATTATTT
GGTGTCGCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTTTTCTT
TCCGTCTGCCCCGACCCCCGCCCATTCCCTCTGATTCTCCCTGCCCCCCT
CGTCCGCTCTCGGTCTCCCCTTTCATACTCTCTCTCCCCCCCTCCCTTCA
CCCCCTCTTTCATCTCCTTTCCTCCCCCTCTCCGAACCCCCTGCTCCCTT
CCTGCTTCCCTTTTTGCCTATCTCCATCTTTCCTCGCCCCTTCTCCTCTC
GCCCTCTGTTCCCTTCTCGCCCCTCTTCTTCACCTACCCTTTCCCCTTCA
CCCCTCCCCCTCTCTTTCTCCCTCCCGTTCGCTCGATACTTACCCCCCTT
CTTTTCCGTTTCTCCCCTTTTCCCGTTCTTCCCCCAATTTTGCCGCTTTG
TACCCGCTCCTTCCCCTTTTCCGTTCCGTCTCGCTCCCCTCGCCTCCTGC
CTGCCGACCGTCGGTGGCGTCCCCCCTCGCGCTCN
TTCCACTCCCTTCCCNCCGGTNGGTTTTACTTTTNCATCTCAATTTNNNT
TCTCAATGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAATTCAGGAGCCTTCTAAGGCT
TCTAACTTCTGTGATGAAGTTTAACGCACAGCAGTGTGCTTGGTCTCCGG
TTCCCACTCCCTCCTTAGATTCTGGGACTCTGAATACCTTCTGGGACCAA
GCCACCAGAGGGTATGCTGGAAGTTCAAATGCCTGAAAACTTCATCCATT
TCTGAACACTATTTAAAATCAGCTCAGCATCCAGTTGATCACCTAGCACG
CACCAAGAATACATTATTGTTGTAGCTTTTCGAATGTAGTCATCTGGGCA
GGGTTGTTTTCCTTTTATTACACCCCCCCCTCCCGCTTGCCTGTATTTTC
CAAGCAAATACTGACCACAATTTTATACTGAAACTGGAGGACAATGGGGC
AAAATTGAGTCGGTGGGCAGGGATCCATGAGTGGCGCAGTGTAGCCATTT
TAGATTAAGCTTTTCACTGTGTGCTAACTGGTCACTGAGAGGCAGTGTTT
CTGAGGGGACCCATCAGCAGCTGACTACTAAGACACTTCTCAGCCATGGA
GAGATTTTCCCTTCTCTTTGACTTCCATTTCTTCCCCTCTAGAGACAGGA
GAATGATAGTTCAGATACTAAGAATTACTGTCAGAAATGTGTAAAAATTT
ACCTGAATGTCATTTTTTTTCCAAATCAATTTATGAATGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_a11.g1 MSMg01no237_a11.g1 CHROMAT_FILE:
MSMg01no237_a11.g1 PHD_FILE: MSMg01no237_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:44 2005
         (287 letters)



>mm_chr9_32148957_32149643
          Length = 687

 Score =  426 bits (220), Expect = e-123
 Identities = 264/284 (92%), Gaps = 12/284 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattcaggagccttctaaggcttctaacttctgtgatgaagtttaacgcacagcagtgtg 60
           ||||||||||||||||||||   |||    ||||| | |  | |   ||| ||||||| |
Sbjct: 523 aattcaggagccttctaagg---cta----ctgtggtca--tct---gcatagcagtggg 476

                                                                       
Query: 61  cttggtctccggttcccactccctccttagattctgggactctgaataccttctgggacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 cttggtctccggttcccactccctccttagattctgggactctgaataccttctgggacc 416

                                                                       
Query: 121 aagccaccagagggtatgctggaagttcaaatgcctgaaaacttcatccatttctgaaca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 415 aagccaccagagggtatgctggaagttcaaatgcctgaaaacttcatccacttctgaaca 356

                                                                       
Query: 181 ctatttaaaatcagctcagcatccagttgatcacctagcacgcaccaagaatacattatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ctatttaaaatcagctcagcatccagttgatcacctagcacgcaccaagaatacattatt 296

                                                       
Query: 241 gttgtagcttttcgaatgtagtcatctgggcagggttgttttcc 284
           |||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 295 gttggagcctttcgaatgtagtcatctgggcagggttgttttcc 252


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)