BAC Information

Click to search

BAC

Clone NameMSMg01-237G18
Chromosome9 (Build37)
Map Location 23,386,057 - 23,570,601
singlet/doubletdoublet
Overlap geneLOC100040866
Upstream geneBbs9, Bmper
Downstream geneLOC100040878, LOC100040893, Npsr1, Dpy19l1, Cypt4, Tbx20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237G18.T7 (MSMg01no237_g18.b1)MSMg01-237G18.TJ (MSMg01no237_g18.g1)
ACCAG402375AG402376
length728760
length of high quality
(start - end)
326 (9 - 334)279 (388 - 666)
definitionCHROMAT_FILE: MSMg01no237_g18.b1 PHD_FILE: MSMg01no237_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:15 2005CHROMAT_FILE: MSMg01no237_g18.g1 PHD_FILE: MSMg01no237_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,570,291 - 23,570,601)(23,386,057 - 23,386,335)
sequence
CTACCTATAGGGAGAGGATCCGCGGAATTCCTCTTCAGGTGTGAGGGGGC
AGACATTTCTTAGAGCATCCCCACACTGATGTGGTGATGAGGGCATTCCC
TGTTTGGTTCTAGGCATACTTGGTTTACACTCAAGCTGCCCATTATCCTT
AGTTTTTCTAACACTTGAGTAATATCAGCTATGGGGTACCTACATAGACA
CAATGTAACACTCATGTCTAGGGTCTTGTGTCCTCAGGAGGATACTTCAA
GGCATTTGTCTTTCACTCCTGATATCTGCTGTTCTCGCTATCACTATCTG
CTATAATTCAAGTCTTTGATGATAGTGGGGAACATTTTTTTTTCATCCCC
CCCTCCCATTCTCTGAGTCATTATACCTCTGATATTGTTTCTCCTATATT
CTTAATTTACTCTCTACCTGCAGATTCTCCATGAATTTTCAGAGAGAAAA
CACCCTCATTGTGGCGTGTGGCTTCCACTTTTTTTCCTGACATTTATTTG
AACTAAGGAGGCACAGAGCAATAGACTGTAGGGATTGGAAAAAGGAAATA
AAACCAGATACCATAAAAACAAACACATTGATAAATTCCTCAATGGTATT
TTCTAGTTGTATTAAGTCCTTGTGAGCCCAAGCTCACAGATTATTACTGT
ACAAAGATACAGATGAGGGGAACTAAATTTCCAATTATTCTAAATGCATG
TTTTGTTAGTCACAGAATGTGAATTCCG
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGCCTTGTTCCGGCACAGTGACTGC
AGGGGAGAAGGTATTTTCAAGCCCCCAGAGCCACATTGGAGAGCATATTC
ACATGGGAATTAGCATTACTTGATTAGGAAACTACAATCTCATTACATAA
AGTGTAGAGAGGGTTTATGTAATAGCCGTAGAGGGAAGCCAAGAAAGATA
AGACTAGAAAAATAGTGGCAGATGGTGAATGGTCTCCAAAGCTCTGCAGG
GAGGCTTTGGCTTGGTCTCGCATATATCAGGGAAGACTGTGGATGAGTGT
GACAGGCTTGGATTCTTTATACCTCTCCCGCCACCATTTTGTGGAGTGTG
TAATGAATCTTCCAGAGATGTCAGGGATAAATATGACTTTACAGGATTAT
AAAAGTCACAATTCAAAGCAGCTATGAATGTACTCTGCTTCACCCCATGC
CCCCAACAGCAGGAGTATTTACATTTAATTTTTGCACCATAACTCCTCCA
AGGACAGTTGTGTAAACTCACACCGGCTCTCTTGGAAGTAGCAGGTGTCT
TCTTTATTCCGTTTTCTATTGCTATGATCGCCTTCTTCCTATTTCTTGTT
GCAGCTTCTCTGAACAAGATTATAGCTGTAACCTTTTAACCAAAATAAGC
ATTCAAAAGTCTCACTACGATTTATATTCTTGTCACAAAGCAGCCGTTTT
TACCTAGACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_g18.b1 MSMg01no237_g18.b1 CHROMAT_FILE:
MSMg01no237_g18.b1 PHD_FILE: MSMg01no237_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:15 2005
         (326 letters)



>mm_chr9_23570076_23570801
          Length = 726

 Score =  563 bits (291), Expect = e-165
 Identities = 306/311 (98%)
 Strand = Plus / Minus

                                                                       
Query: 16  ggaattcctcttcaggtgtgagggggcagacatttcttagagcatccccacactgatgtg 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ggaattcctcttcaggtgtgagggggcagacatttcttagagcatccccacactgatgtg 467

                                                                       
Query: 76  gtgatgagggcattccctgtttggttctaggcatacttggtttacactcaagctgcccat 135
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gtgatgagggcatttggtgtttggttctaggcatacttggtttacactcaagctgcccat 407

                                                                       
Query: 136 tatccttagtttttctaacacttgagtaatatcagctatggggtacctacatagacacaa 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tatccttagtttttctaacacttgagtaatatcagctatggggtacctacatagacacaa 347

                                                                       
Query: 196 tgtaacactcatgtctagggtcttgtgtcctcaggaggatacttcaaggcatttgtcttt 255
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 cgtaacactcatgtctagggtcttgtgtcctcaggaggatacttcaaggcatttgtcttt 287

                                                                       
Query: 256 cactcctgatatctgctgttctcgctatcactatctgctataattcaagtctttgatgat 315
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 286 cactcctgatatctgctgttctcgatatcactatctgctataattcaagtctttgatgat 227

                      
Query: 316 agtggggaaca 326
           |||||||||||
Sbjct: 226 agtggggaaca 216


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no237_g18.g1 MSMg01no237_g18.g1 CHROMAT_FILE:
MSMg01no237_g18.g1 PHD_FILE: MSMg01no237_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:15 2005
         (279 letters)



>mm_chr9_23385857_23386535
          Length = 679

 Score =  501 bits (259), Expect = e-146
 Identities = 274/279 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtggagtgtgtaatgaatcttccagagatgtcagggataaatatgactttacaggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtggagtgtgtaatgaatcttccagagatgtcagggataaatatgactttacaggat 260

                                                                       
Query: 61  tataaaagtcacaattcaaagcagctatgaatgtactctgcttcaccccatgcccccaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tataaaagtcacaattcaaagcagctatgaatgtactctgcttcaccccatgcccccaac 320

                                                                       
Query: 121 agcaggagtatttacatttaatttttgcaccataactcctccaaggacagttgtgtaaac 180
           ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 agcaggagtatttacatttgatttttgcaacataactcctccaaggacagttgtgtaaac 380

                                                                       
Query: 181 tcacaccggctctcttggaagtagcaggtgtcttctttattccgttttctattgctatga 240
           ||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 381 tcacaccggctcttttggaagtagcaggggtcttctttattcagttttctattgctatga 440

                                                  
Query: 241 tcgccttcttcctatttcttgttgcagcttctctgaaca 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcgccttcttcctatttcttgttgcagcttctctgaaca 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)