Query= MSMg01no237_h01.b1 MSMg01no237_h01.b1 CHROMAT_FILE:
MSMg01no237_h01.b1 PHD_FILE: MSMg01no237_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:16 2005
(369 letters)
>mm_chr9_112339686_112340455
Length = 770
Score = 495 bits (256), Expect = e-144
Identities = 327/366 (89%), Gaps = 26/366 (7%)
Strand = Plus / Minus
Query: 6 gaattcaattcttttctttgactatgtgggtctcctagggatcacactcagctatcagct 65
||||||| |||||| |||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 718 gaattcagttctttcctttgactatgtgggtctcccagggatcacactcaactatcagct 659
Query: 66 atggcagcaagcacctttacctgctgactcatcacagcaactgtcattgttcttaaatag 125
|||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||
Sbjct: 658 atggcagcaagcacctttacctgccgactcaccgcagcaactgtcattgttcttaaatag 599
Query: 126 ttcctgagttcatgaaacctgcaagtgtcctggagtccaaaggcattttggtctggagcc 185
|||||||||||||||||||||||||||| |||||||||
Sbjct: 598 ttcctgagttcatgaaacctgcaagtgt-----------------------tctggagcc 562
Query: 186 caaaggcattttggtctcggcgagatgtactgtcctcaggt--taatcacacacattctt 243
|||||||||||||||||||| |||||||||||||||||||| ||| ||||| |||||||
Sbjct: 561 caaaggcattttggtctcggtgagatgtactgtcctcaggtgttaaccacacccattctt 502
Query: 244 gatcctaggatattaaatgaaacttcactcctgattttattacacgacaactgatttcat 303
||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||
Sbjct: 501 gatcctaggatattaaatggaacttcactcctgattt-actacacgacaactgatttcat 443
Query: 304 cctttttccaggtcatgcttgaaccattctccagaaactcagcttcagttgaccaatgat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cctttttccaggtcatgcttgaaccattctccagaaactcagcttcagttgaccaatgat 383
Query: 364 agccca 369
|||||
Sbjct: 382 ggccca 377
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 770
Length adjustment: 9
Effective length of query: 360
Effective length of database: 761
Effective search space: 273960
Effective search space used: 273960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no237_h01.g1 MSMg01no237_h01.g1 CHROMAT_FILE:
MSMg01no237_h01.g1 PHD_FILE: MSMg01no237_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:16 2005
(461 letters)
>mm_chr9_112189265_112190124
Length = 860
Score = 837 bits (433), Expect = 0.0
Identities = 454/461 (98%), Gaps = 1/461 (0%)
Strand = Plus / Plus
Query: 1 ctggccctcaccccatcctcatctgatgaagtcttccagaattttaacacggaccatgca 60
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 201 ctggccctcaccccatcctcatctgatgaagtcttccagaattttaagatggaccatgca 260
Query: 61 aaagcaagtatgtagtgtctacaatcttagaggctgagtggtatttgactattgtttttg 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagcaagtatctagtgtctacaatcttagaggctgagtggtatttgactattgtttttg 320
Query: 121 ccaaggtgcagggtctaagttagaaacaacctcgtgtgctttctaaggctgtttctggtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaaggtgcagggtctaagttagaaacaacctcgtgtgctttctaaggctgtttctggtc 380
Query: 181 tttccgtttttaatgttgaaactgatgttaatgtacttttcaatatttaattttccattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttccgtttttaatgttgaaactgatgttaatgtacttttcaatatttaattttccattt 440
Query: 241 tcccccttttagggtttctgccttatctccagtttcataaaatattcatgttaaatcttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcccccttttagggtttctgccttatctccagtttcataaaatattcatgttaaatcttt 500
Query: 301 taaaaagttttttttacacttccttattcatttatttgctgcgcggaggtcagaagatca 360
|||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 501 taaaaagttttttt-acacttccttattcatttatttgctgtgtggaggtcagaagatca 559
Query: 361 cttcctagacatggttctcctgccatgtgggctctgagaattgaacccaggtcaccaggc 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cttcctagagatggttctcctgccatgtgggctctgagaattgaacccaggtcaccaggc 619
Query: 421 ttggtggcaagctcctttagcttcagagaactactggtggc 461
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttggtggcaagctcctttagcttcagagaactactggtggc 660
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 860
Length adjustment: 10
Effective length of query: 451
Effective length of database: 850
Effective search space: 383350
Effective search space used: 383350
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
