Query= MSMg01no237_k24.b1 MSMg01no237_k24.b1 CHROMAT_FILE:
MSMg01no237_k24.b1 PHD_FILE: MSMg01no237_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:34 2005
(319 letters)
>mm_chr9_51558189_51558907
Length = 719
Score = 592 bits (306), Expect = e-173
Identities = 312/314 (99%)
Strand = Plus / Plus
Query: 5 gaattctccagtttctctacttatatttcattagcatttgggaagagtgccagtgtttgg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccagtttctctacttatatttcattagcatttgggaagagtgccagtgtttgg 264
Query: 65 ttaagctaagtcctgctgatgctcttgtcaagataacataaaaatgcagtgtcggctgta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 265 ttaagctaagtcctgctgatgctcttgtcaagataacataaaaatgcagtgtcagctgta 324
Query: 125 gttttattttgtctcttcttagcgtccccccacaatgcaacagtgcgcctatagcaatag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttttattttgtctcttcttagcgtccccccacaatgcaacagtgcgcctatagcaatag 384
Query: 185 cctgtgatatgttgtatatgtttcttcatttggtatgtcctttttacaaaaccttttctc 244
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctgtgataagttgtatatgtttcttcatttggtatgtcctttttacaaaaccttttctc 444
Query: 245 actttgtccttgtatttgatgtgtatcatacctgatatttctttccacatagagacttaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 actttgtccttgtatttgatgtgtatcatacctgatatttctttccacatagagacttaa 504
Query: 305 aagaacatgtataa 318
||||||||||||||
Sbjct: 505 aagaacatgtataa 518
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space: 220100
Effective search space used: 220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no237_k24.g1 MSMg01no237_k24.g1 CHROMAT_FILE:
MSMg01no237_k24.g1 PHD_FILE: MSMg01no237_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:34 2005
(249 letters)
>mm_chr9_51650280_51650923
Length = 644
Score = 412 bits (213), Expect = e-119
Identities = 237/249 (95%), Gaps = 9/249 (3%)
Strand = Plus / Minus
Query: 1 ttacttcttatgggttccactagggcagggacaggctcttgccccctccccatatacagc 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 434 ttacttcttatgggttccactagggcagggacaggctcttgccccctcggcatatacagc 375
Query: 61 aatgtaaagtgtaggtcggcacagtggaggcaattactgagctgttacaaagtatcccat 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aatgtaaagtgtaggtcgacacagtggaggcaattactgagctgttacaaagtatcccat 315
Query: 121 gggaagctgatagaggaggattagggaggtgtcaaccataaccagataactaaaaacctc 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gggaagctgata---gaggattagggaggtgtcaaccataaccagataactaaaaacctc 258
Query: 181 tgtagctgtgctgcctactttttttctcctcctcttcatttttttggggtggggtgggtg 240
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 257 tgtagctgtgctgcctac-ttttttctcctcctcttcatttttt-----tggggtgggtg 204
Query: 241 ggtaagaaa 249
|||||||||
Sbjct: 203 ggtaagaaa 195
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 644
Length adjustment: 9
Effective length of query: 240
Effective length of database: 635
Effective search space: 152400
Effective search space used: 152400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
